Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RbkR - Methanomicrobiales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Euryarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Candidatus Methanoregula boonei 6A8 2 1
Candidatus Methanosphaerula palustris E1-9c 3 1
Methanocorpusculum labreanum Z 3 1
Methanoculleus marisnigri JR1 2 1
Methanospirillum hungatei JF-1 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribE
 
Candidatus Methanoregula boonei 6A8
 
Candidatus Methanosphaerula palustris E1-9c
*
Methanocorpusculum labreanum Z

Site:
position = -100
score = 4.61277
sequence = TAACTCATTTTTGATTGG

Gene: Mlab_0397: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Methanoculleus marisnigri JR1
 
Methanospirillum hungatei JF-1
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribB
 
Candidatus Methanoregula boonei 6A8
 
Candidatus Methanosphaerula palustris E1-9c
 
Methanocorpusculum labreanum Z

Gene: Mlab_0396: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanoculleus marisnigri JR1
 
Methanospirillum hungatei JF-1
3,4-dihydroxy-2-butanone 4-phosphate synthase
ribH
 
Candidatus Methanoregula boonei 6A8
 
Candidatus Methanosphaerula palustris E1-9c
 
Methanocorpusculum labreanum Z

Gene: Mlab_0395: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Methanoculleus marisnigri JR1
 
Methanospirillum hungatei JF-1
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
rbkR
*
Candidatus Methanoregula boonei 6A8

Site:
position = -19
score = 5.55423
sequence = CATCTCAATTTTGATAAG

Gene: Mboo_0159: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Candidatus Methanosphaerula palustris E1-9c

Site:
position = -17
score = 5.68931
sequence = CATCTCAATTTTGATATA

Gene: Mpal_2512: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
 
Methanocorpusculum labreanum Z

Gene: Mlab_1629: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Methanoculleus marisnigri JR1

Site:
position = -18
score = 5.36441
sequence = CATCTCAATTATGGTATA

Gene: Memar_2359: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Methanospirillum hungatei JF-1

Site:
position = -68
score = 5.03328
sequence = CATATCACTTATGATATC

Site:
position = -18
score = 5.09246
sequence = CATCTCACATATGATATC

Gene: Mhun_1259: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
ribB
 
Candidatus Methanoregula boonei 6A8

Gene: Mboo_0160: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 2
Candidatus Methanosphaerula palustris E1-9c

Gene: Mpal_2514: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene: Mpal_2513: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanocorpusculum labreanum Z
 
Methanoculleus marisnigri JR1

Gene: Memar_2358: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanospirillum hungatei JF-1

Gene: Mhun_1258: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD