Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RbkR - Thermoplasmatales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Euryarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ferroplasma acidarmanus fer1 6 4
Picrophilus torridus DSM 9790 6 4
Thermoplasma acidophilum DSM 1728 1 1
Thermoplasma volcanium GSS1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
arfC
*
Ferroplasma acidarmanus fer1

Site:
position = -56
score = 5.20605
sequence = TAACTCATAATTAGGTAA

Gene: Faci_03000281: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
*
Picrophilus torridus DSM 9790

Site:
position = -71
score = 5.29708
sequence = TTACTTATAGATAAGTAA

Site:
position = -56
score = 5.63544
sequence = TAACTTAATTATAAGTAA

Gene: PTO0710: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
Thermoplasma acidophilum DSM 1728
 
Thermoplasma volcanium GSS1
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
CRON 2.
ribB
*
Ferroplasma acidarmanus fer1

Site:
position = -56
score = 5.48269
sequence = TAACTCATTTATAAGTAT

Gene: Faci_03000282: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Picrophilus torridus DSM 9790

Site:
position = -56
score = 5.59329
sequence = TTACTTAATAATGAGTAG

Gene: PTO0712: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Thermoplasma acidophilum DSM 1728
 
Thermoplasma volcanium GSS1
3,4-dihydroxy-2-butanone 4-phosphate synthase
ribE
 
Ferroplasma acidarmanus fer1

Gene: Faci_03000283: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Picrophilus torridus DSM 9790

Gene: PTO0713: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Thermoplasma acidophilum DSM 1728
 
Thermoplasma volcanium GSS1
Riboflavin synthase archaeal (EC 2.5.1.9)
ribH
 
Ferroplasma acidarmanus fer1

Gene: Faci_03000284: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Picrophilus torridus DSM 9790

Gene: PTO0714: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermoplasma acidophilum DSM 1728
 
Thermoplasma volcanium GSS1
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 3.
pyrD
*
Ferroplasma acidarmanus fer1

Site:
position = -48
score = 5.20605
sequence = TTACCTAATTATGAGTTA

Gene: Faci_03000280: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
*
Picrophilus torridus DSM 9790

Site:
position = -109
score = 5.63544
sequence = TTACTTATAATTAAGTTA

Site:
position = -94
score = 5.29708
sequence = TTACTTATCTATAAGTAA

Gene: PTO0711: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
Thermoplasma acidophilum DSM 1728
 
Thermoplasma volcanium GSS1
Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
CRON 4.
ribT
*
Ferroplasma acidarmanus fer1

Site:
position = -58
score = 5.53034
sequence = ATACTTAATTTTAAGTAA

Gene: Faci_03001175: Predicted riboflavin transporter
*
Picrophilus torridus DSM 9790

Site:
position = -56
score = 5.2526
sequence = AAACTCAAAAATAAGTAG

Gene: PTO1251: Predicted riboflavin transporter
*
Thermoplasma acidophilum DSM 1728

Site:
position = -58
score = 4.66951
sequence = CTACTAATTCACGAGTAA

Gene: Ta1287: Predicted riboflavin transporter
*
Thermoplasma volcanium GSS1

Site:
position = -38
score = 4.21848
sequence = TTACTCAAATTTTATATA

Site:
position = -56
score = 5.42296
sequence = TTACTAATATATGAGTAT

Gene: TVN0303: Predicted riboflavin transporter
Predicted riboflavin transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD