Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RbkR - Archaeoglobales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Euryarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Archaeoglobus fulgidus DSM 4304 2 1
Archaeoglobus profundus DSM 5631 3 2
Ferroglobus placidus DSM 10642 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribBA
 
Archaeoglobus fulgidus DSM 4304

Gene: AF0484: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
*
Archaeoglobus profundus DSM 5631

Site:
position = -49
score = 6.25704
sequence = TTTGAGATATATCTCAAA

Gene: Arcpr_1140: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
*
Ferroglobus placidus DSM 10642

Site:
position = 12
score = 6.02434
sequence = TTTGAGAAAAATCTCAAA

Gene: Ferp_1619: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
CRON 2.
rbkR
*
Archaeoglobus fulgidus DSM 4304

Site:
position = 30
score = 5.65622
sequence = TTTGAGGTGCTTCTCATA

Gene: AF2106: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Archaeoglobus profundus DSM 5631

Site:
position = -24
score = 5.22174
sequence = CTTGAGAATCATCTCACG

Gene: Arcpr_1275: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Ferroglobus placidus DSM 10642

Site:
position = -27
score = 5.63611
sequence = TCTGAGAAGCATCTCATT

Gene: Ferp_0920: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
ribB
 
Archaeoglobus fulgidus DSM 4304

Gene: AF2107: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Archaeoglobus profundus DSM 5631

Gene: Arcpr_1274: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Ferroglobus placidus DSM 10642

Gene: Ferp_0919: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD