Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PpsR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: repressor
Biological process: Photosynthesis
Effector: Blue light
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 74 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1 46 12
Loktanella vestfoldensis SKA53 44 10
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1 48 12
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217 43 9
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Sulfitobacter sp. EE-36
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
crtI
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -87
score = 5.28302
sequence = TGTCAACCAAGTCTGACA

Site:
position = -11
score = 5.12708
sequence = TGTCAACTAATATGGACA

Gene: Jann_0143: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
*
Loktanella vestfoldensis SKA53

Site:
position = -34
score = 5.41799
sequence = TGTCAACTTTGGTTTACA

Site:
position = -9
score = 4.03407
sequence = TGTGGGCTTATGTTGACA

Site:
position = -90
score = 5.47341
sequence = TGTCAACTTAGTCTGACA

Gene: SKA53_12118: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -64
score = 4.87731
sequence = TGTAAACCTGACTAGACA

Gene: RSP_0271: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -34
score = 5.34464
sequence = TGTCAATTAAACTAGACA

Site:
position = -89
score = 5.1958
sequence = TGTCAGATAAGTCTGACA

Gene: ROS217_22367: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
crtB
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0142: Phytoene synthase (EC 2.5.1.32)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12123: Phytoene synthase (EC 2.5.1.32)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0270: Phytoene synthase (EC 2.5.1.32)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22362: Phytoene synthase (EC 2.5.1.32)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Phytoene synthase (EC 2.5.1.32)
tspO
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12128: Regulatory protein TspO
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0269: Regulatory protein TspO
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22357: Regulatory protein TspO
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Regulatory protein TspO
 
CRON 2.
crtA
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -110
score = 5.12708
sequence = TGTCCATATTAGTTGACA

Site:
position = -34
score = 5.28302
sequence = TGTCAGACTTGGTTGACA

Gene: Jann_0144: Spheroidene monooxygenase
*
Loktanella vestfoldensis SKA53

Site:
position = -116
score = 4.03407
sequence = TGTCAACATAAGCCCACA

Site:
position = -91
score = 5.41799
sequence = TGTAAACCAAAGTTGACA

Site:
position = -35
score = 5.47341
sequence = TGTCAGACTAAGTTGACA

Gene: SKA53_12113: Spheroidene monooxygenase
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -111
score = 4.87731
sequence = TGTCTAGTCAGGTTTACA

Gene: RSP_0272: Spheroidene monooxygenase
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -37
score = 4.47858
sequence = TGTCAACATAAGATGACC

Site:
position = -12
score = 5.34464
sequence = TGTCTAGTTTAATTGACA

Gene: ROS217_22372: Spheroidene monooxygenase
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Spheroidene monooxygenase
bchI
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0145: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12108: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0273: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22377: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
bchD
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0146: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12103: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0274: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22382: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
bchO
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0147: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12098: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0275: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22387: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
 
CRON 3.
hcaR
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -67
score = 5.16859
sequence = TGTAAGGTTGAGTTGACA

Gene: Jann_0300: 7-hydroxymethyl chlorophyll a reductase
*
Loktanella vestfoldensis SKA53

Site:
position = -46
score = 5.0362
sequence = TGTAAATCAAACTGGACA

Gene: SKA53_10144: 7-hydroxymethyl chlorophyll a reductase
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
7-hydroxymethyl chlorophyll a reductase
 
CRON 4.
Jann_1581
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -163
score = 5.24421
sequence = TGTCAATCATGATTTACA

Site:
position = -138
score = 4.88511
sequence = TGTCAGTTAATTGTGACA

Gene: Jann_1581: antenna complex, alpha/beta subunit
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
antenna complex, alpha/beta subunit
Jann_1582
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_1582: antenna complex, alpha/beta subunit
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
antenna complex, alpha/beta subunit
pucBA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_1583: Light-harvesting 1 (B870) complex assembly
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0315: Light-harvesting 1 (B870) complex assembly
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting 1 (B870) complex assembly
pucB
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -169
score = 5.02914
sequence = TGTCAGCCAACACTGACA

Site:
position = -144
score = 4.69052
sequence = TGTCAGCGCAATGTGACA

Gene: RSP_0314: Light-harvesting LHII, beta subunit A
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting LHII, beta subunit A
pucA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6256: Light-harvesting LHII, alpha subunit A
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting LHII, alpha subunit A
 
CRON 5.
hemE
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3568: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
*
Jannaschia sp. CCS1

Site:
position = -86
score = 5.38269
sequence = TGTCAACTTGGCTTGACA

Gene: Jann_3846: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_08221: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_10034: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10471: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_09478: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Paracoccus denitrificans PD1222

Gene: Pden_3629: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -84
score = 4.73872
sequence = TGTCCATTTGCCCTGACA

Gene: RSP_0680: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_10069: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Roseobacter sp. MED193

Gene: MED193_11118: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Roseovarius nubinhibens ISM

Gene: ISM_11815: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Roseovarius sp. 217

Gene: ROS217_17562: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Silicibacter TM1040

Gene: TM1040_2528: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Silicibacter pomeroyi DSS-3

Gene: SPO3648: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
Sulfitobacter sp. EE-36

Gene: EE36_05193: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
 
CRON 6.
bchE
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -34
score = 4.92565
sequence = TGTCAACTGAAATGGACA

Gene: RSP_0281: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -58
score = 5.73527
sequence = TGTCAAGTTAAGTTGACA

Gene: ROS217_16035: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81)
bchJ
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0280: Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_16030: Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide
 
CRON 7.
hemC
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3227: Porphobilinogen deaminase (EC 2.5.1.61)
*
Jannaschia sp. CCS1

Site:
position = -34
score = 5.38269
sequence = TGTCAAGCCAAGTTGACA

Gene: Jann_3845: Porphobilinogen deaminase (EC 2.5.1.61)
*
Loktanella vestfoldensis SKA53

Site:
position = -35
score = 5.12913
sequence = TGTCAGGCCAGATTGACA

Gene: SKA53_08216: Porphobilinogen deaminase (EC 2.5.1.61)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_10709: Porphobilinogen deaminase (EC 2.5.1.61)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10476: Porphobilinogen deaminase (EC 2.5.1.61)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_09473: Porphobilinogen deaminase (EC 2.5.1.61)
 
Paracoccus denitrificans PD1222

Gene: Pden_3630: Porphobilinogen deaminase (EC 2.5.1.61)
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -35
score = 4.73872
sequence = TGTCAGGGCAAATGGACA

Gene: RSP_0679: Porphobilinogen deaminase (EC 2.5.1.61)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_10064: Porphobilinogen deaminase (EC 2.5.1.61)
 
Roseobacter sp. MED193

Gene: MED193_11123: Porphobilinogen deaminase (EC 2.5.1.61)
 
Roseovarius nubinhibens ISM

Gene: ISM_11820: Porphobilinogen deaminase (EC 2.5.1.61)
 
Roseovarius sp. 217

Gene: ROS217_17557: Porphobilinogen deaminase (EC 2.5.1.61)
 
Silicibacter TM1040

Gene: TM1040_2529: Porphobilinogen deaminase (EC 2.5.1.61)
 
Silicibacter pomeroyi DSS-3

Gene: SPO3649: Porphobilinogen deaminase (EC 2.5.1.61)
 
Sulfitobacter sp. EE-36

Gene: EE36_05198: Porphobilinogen deaminase (EC 2.5.1.61)
Porphobilinogen deaminase (EC 2.5.1.61)
 
CRON 8.
crtE
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -98
score = 5.20023
sequence = TGTCAGTCAATGTTGACA

Site:
position = -67
score = 4.79848
sequence = TGTCCAGTCTGATTTACA

Gene: Jann_0182: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
*
Loktanella vestfoldensis SKA53

Site:
position = -71
score = 4.49092
sequence = TGTATCGTTTGATTTACA

Site:
position = -45
score = 5.21776
sequence = TGTAAACTAAAATAGACA

Gene: SKA53_12318: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -90
score = 5.06974
sequence = TGTAAGAAAAAGTTGACA

Gene: RSP_0265: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -63
score = 4.96068
sequence = TGTCCAGTATGATTTACA

Site:
position = -38
score = 4.46251
sequence = TGTCAGATTTGTGATACA

Gene: ROS217_22342: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
crtF
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0181: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12323: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0264: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22337: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
 
CRON 9.
crtD
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -50
score = 4.79848
sequence = TGTAAATCAGACTGGACA

Site:
position = -19
score = 5.20023
sequence = TGTCAACATTGACTGACA

Gene: Jann_0183: Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
*
Loktanella vestfoldensis SKA53

Site:
position = -61
score = 5.21776
sequence = TGTCTATTTTAGTTTACA

Site:
position = -35
score = 4.49092
sequence = TGTAAATCAAACGATACA

Gene: SKA53_12313: Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -72
score = 5.06974
sequence = TGTCAACTTTTTCTTACA

Gene: RSP_0266: Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -72
score = 4.46251
sequence = TGTATCACAAATCTGACA

Site:
position = -47
score = 4.96068
sequence = TGTAAATCATACTGGACA

Gene: ROS217_22347: Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
ctrC
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0184: Hydroxyneurosporene synthase
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12308: Hydroxyneurosporene synthase
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0267: Hydroxyneurosporene synthase
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22352: Hydroxyneurosporene synthase
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Hydroxyneurosporene synthase
 
CRON 10.
bchG
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -56
score = 4.53242
sequence = CGTAAACCTGAGTTTACA

Site:
position = -21
score = 5.3815
sequence = TGTCAGCCTAAGCTGACA

Gene: Jann_0165: Bacteriochlorophyll/chlorophyll synthetase
*
Loktanella vestfoldensis SKA53

Site:
position = -55
score = 5.2039
sequence = TGTAAGCTTTAGTTTACA

Site:
position = -20
score = 5.11884
sequence = TGTCATCTTAGACTGACA

Gene: SKA53_10604: Bacteriochlorophyll/chlorophyll synthetase
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -21
score = 4.21062
sequence = CGTCATGCTTAGGTGACA

Site:
position = 5
score = 5.03869
sequence = TGTCAATCTATCCTTACA

Gene: RSP_0279: Bacteriochlorophyll/chlorophyll synthetase
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -20
score = 5.16267
sequence = TGTATAGTTTAATTGACA

Site:
position = 5
score = 4.1169
sequence = TGTCACAGAGTCCTTACA

Gene: ROS217_22192: Bacteriochlorophyll/chlorophyll synthetase
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Bacteriochlorophyll/chlorophyll synthetase
pucC
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0166: Bacteriochlorophyll synthase 44.5 kDa chain
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10609: Bacteriochlorophyll synthase 44.5 kDa chain
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0278: Bacteriochlorophyll synthase 44.5 kDa chain
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22187: Bacteriochlorophyll synthase 44.5 kDa chain
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Bacteriochlorophyll synthase 44.5 kDa chain
bchP
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0167: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10614: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0277: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22182: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
 
CRON 11.
bchC
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -125
score = 4.95241
sequence = TGTCTATTCACGTTGACA

Site:
position = -99
score = 5.44958
sequence = TGTCAGGTTAAACTGACA

Gene: Jann_0180: Chlorophyll synthesis pathway, bchC
*
Loktanella vestfoldensis SKA53

Site:
position = -181
score = 5.14881
sequence = TGTAAGGTAAAGTTTACA

Site:
position = -156
score = 4.84589
sequence = TGTCTAAAAGAATTGACA

Gene: SKA53_12328: Chlorophyll synthesis pathway, bchC
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -116
score = 5.32474
sequence = TGTCCAATAAAGTTGACA

Site:
position = -90
score = 4.41339
sequence = TGTCCCGTTAATGTTACA

Gene: RSP_0263: Chlorophyll synthesis pathway, bchC
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -187
score = 4.6392
sequence = TGTCAAGTCAGCCTGACG

Site:
position = -153
score = 5.11017
sequence = TGTAAAGAAAGATTGACA

Site:
position = -127
score = 4.64746
sequence = TGTCCGGTTACACTTACA

Gene: ROS217_22332: Chlorophyll synthesis pathway, bchC
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Chlorophyll synthesis pathway, bchC
bchX
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0179: Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12333: Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0262: Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22327: Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
bchY
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0178: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12343: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0261: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22322: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
bchZ
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0177: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12348: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0260: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22317: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
pufQ
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0176: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12353: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0259: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22312: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
pufK
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6109: Transcriptional regulatory protein pufK
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Transcriptional regulatory protein pufK
pufB
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0175: Light-harvesting LHI, beta subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12358: Light-harvesting LHI, beta subunit
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6108: Light-harvesting LHI, beta subunit
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22307: Light-harvesting LHI, beta subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting LHI, beta subunit
pufA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0174: Light-harvesting LHI, alpha subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12363: Light-harvesting LHI, alpha subunit
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0258: Light-harvesting LHI, alpha subunit
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22302: Light-harvesting LHI, alpha subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting LHI, alpha subunit
pufL
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0173: Photosynthetic reaction center L subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12368: Photosynthetic reaction center L subunit
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0257: Photosynthetic reaction center L subunit
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22297: Photosynthetic reaction center L subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Photosynthetic reaction center L subunit
pufM
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0172: Photosynthetic reaction center M subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12373: Photosynthetic reaction center M subunit
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0256: Photosynthetic reaction center M subunit
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22292: Photosynthetic reaction center M subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Photosynthetic reaction center M subunit
pufX
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12378: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0255: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
dxsA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0170: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12383: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0254: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22282: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
SKA53_12338
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12338: hypothetical protein
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
hypothetical protein
pufC
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0171: Photosynthetic reaction center cytochrome c subunit
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22287: Photosynthetic reaction center cytochrome c subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Photosynthetic reaction center cytochrome c subunit
 
CRON 12.
ppaA
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -262
score = 5.36312
sequence = TGTCAATCTAAACTTACA

Site:
position = -119
score = 4.57817
sequence = TGTCTAATTTCTATGACA

Gene: Jann_0163: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
*
Loktanella vestfoldensis SKA53

Site:
position = -233
score = 5.45844
sequence = TGTCAATTTACTTTGACA

Gene: SKA53_12018: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -296
score = 5.04989
sequence = TGTCAATTCTGACTTACA

Site:
position = -152
score = 5.38292
sequence = TGTCAATTTTCTTTGACA

Gene: RSP_0283: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -218
score = 5.27215
sequence = TGTCAGGATAATTTGACA

Gene: ROS217_22202: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
ppsR
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0164: Regulator of carotenoid biosynthesis PpsR
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12013: Regulator of carotenoid biosynthesis PpsR
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0282: Regulator of carotenoid biosynthesis PpsR
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22197: Regulator of carotenoid biosynthesis PpsR
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Regulator of carotenoid biosynthesis PpsR
 
CRON 13.
bchF
 
Hyphomonas neptunium ATCC 15444
*
Jannaschia sp. CCS1

Site:
position = -73
score = 5.36312
sequence = TGTAAGTTTAGATTGACA

Site:
position = -216
score = 4.57817
sequence = TGTCATAGAAATTAGACA

Gene: Jann_0162: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
*
Loktanella vestfoldensis SKA53

Site:
position = -68
score = 5.39417
sequence = TGTAAGTTAAAGTTGACA

Site:
position = -192
score = 5.45844
sequence = TGTCAAAGTAAATTGACA

Gene: SKA53_12023: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -94
score = 5.04989
sequence = TGTAAGTCAGAATTGACA

Site:
position = -238
score = 5.38292
sequence = TGTCAAAGAAAATTGACA

Gene: RSP_0284: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -76
score = 5.47394
sequence = TGTAAATTATAATTGACA

Site:
position = -247
score = 5.27215
sequence = TGTCAAATTATCCTGACA

Gene: ROS217_22207: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
bchN
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0161: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12028: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0285: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22212: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
bchB
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0160: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12033: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0286: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22217: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
bchH
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0159: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12038: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0287: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22222: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
bchL
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0158: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12043: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0288: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22227: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
bchM
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0157: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12048: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0289: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22232: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
pucC2
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0156: Light-harvesting 1 (B870) complex assembly
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12053: Light-harvesting 1 (B870) complex assembly
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0290: Light-harvesting 1 (B870) complex assembly
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22237: Light-harvesting 1 (B870) complex assembly
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Light-harvesting 1 (B870) complex assembly
puhA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0155: Photosynthetic reaction center H subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12058: Photosynthetic reaction center H subunit
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0291: Photosynthetic reaction center H subunit
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22242: Photosynthetic reaction center H subunit
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Photosynthetic reaction center H subunit
RSP_0292
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0154: Putative photosynthetic complex assembly protein
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12063: Putative photosynthetic complex assembly protein
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0292: Putative photosynthetic complex assembly protein
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22247: Putative photosynthetic complex assembly protein
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Putative photosynthetic complex assembly protein
RSP_0293
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0153: hypothetical protein
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12068: hypothetical protein
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0293: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22252: hypothetical protein
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
hypothetical protein
RSP_6110
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0152: hypothetical protein
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12073: hypothetical protein
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6110: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22257: hypothetical protein
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
hypothetical protein
acsF
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0151: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12078: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0294: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22262: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
RSP_0295
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0150: hypothetical protein
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12083: hypothetical protein
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0295: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22267: hypothetical protein
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
hypothetical protein
hemA
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1

Gene: Jann_0149: 5-aminolevulinate synthase (EC 2.3.1.37)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12088: 5-aminolevulinate synthase (EC 2.3.1.37)
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22272: 5-aminolevulinate synthase (EC 2.3.1.37)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
5-aminolevulinate synthase (EC 2.3.1.37)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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