Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CsoR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: CsoR
Regulation mode:
Biological process: Copper homeostasis
Effector: Copper ion, (Cu+)
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium adolescentis ATCC 15703 2 2
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171 2 2
Bifidobacterium breve DSM 20213 2 2
Bifidobacterium dentium Bd1 2 2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705 2 2
Bifidobacterium longum subsp. infantis ATCC 15697 2 2
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
copA
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -23
score = 6.24692
sequence = ATACCCTATAGGGGTAT

Gene: BAD_1301: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00319: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1002: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -67
score = 6.18247
sequence = ATACCCTCTAGGGGTAT

Gene: BbifN4_010100007157: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Bifidobacterium breve DSM 20213

Site:
position = -64
score = 6.31708
sequence = ATACCCCATAGGGGTAT

Gene: BIFBRE_02065: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Bifidobacterium dentium Bd1

Site:
position = -73
score = 6.24692
sequence = ATACCCTATAGGGGTAT

Gene: BDP_1759: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01253: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Bifidobacterium longum NCC2705

Site:
position = -65
score = 6.18247
sequence = ATACCCTCTAGGGGTAT

Gene: BL0409: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -64
score = 6.18247
sequence = ATACCCTCTAGGGGTAT

Gene: Blon_0251: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Gardnerella vaginalis 409-05
Copper-translocating P-type ATPase (EC 3.6.3.4)
 
CRON 2.
csoR
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -82
score = 6.24692
sequence = ATACCCCTATAGGGTAT

Gene: BAD_1302: Copper resistance transcriptional regulator CsoR, CsoR family
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -36
score = 6.18247
sequence = ATACCCCTAGAGGGTAT

Gene: BbifN4_010100007162: Copper resistance transcriptional regulator CsoR, CsoR family
*
Bifidobacterium breve DSM 20213

Site:
position = -8
score = 6.31708
sequence = ATACCCCTATGGGGTAT

Gene: BIFBRE_02066: Copper resistance transcriptional regulator CsoR, CsoR family
*
Bifidobacterium dentium Bd1

Site:
position = -85
score = 6.24692
sequence = ATACCCCTATAGGGTAT

Gene: BDP_1760: Copper resistance transcriptional regulator CsoR, CsoR family
 
Bifidobacterium gallicum DSM 20093
*
Bifidobacterium longum NCC2705

Site:
position = -63
score = 6.18247
sequence = ATACCCCTAGAGGGTAT

Gene: BL0408: Copper resistance transcriptional regulator CsoR, CsoR family
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -63
score = 6.18247
sequence = ATACCCCTAGAGGGTAT

Gene: Blon_0252: Copper resistance transcriptional regulator CsoR, CsoR family
 
Gardnerella vaginalis 409-05
Copper resistance transcriptional regulator CsoR, CsoR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD