Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ArgR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine biosynthesis
Effector: Arginine
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 36 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium adolescentis ATCC 15703 8 2
Bifidobacterium angulatum DSM 20098 8 2
Bifidobacterium animalis subsp. lactis AD011 11 3
Bifidobacterium bifidum NCIMB 41171 1 1
Bifidobacterium breve DSM 20213 11 4
Bifidobacterium dentium Bd1 8 2
Bifidobacterium gallicum DSM 20093 13 3
Bifidobacterium longum NCC2705 11 3
Bifidobacterium longum subsp. infantis ATCC 15697 11 3
Gardnerella vaginalis 409-05 6 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
argC
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -33
score = 5.79229
sequence = CTGCATAATTATGCAA

Gene: BAD_0925: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -65
score = 5.81763
sequence = CTGCATAATTATGCAT

Gene: BIFANG_01035: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -79
score = 5.37438
sequence = ATGCATGTTTATGCAA

Gene: BLA_1245: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005485: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium breve DSM 20213

Site:
position = -66
score = 5.28831
sequence = CTGTATAACTATGCAA

Gene: BIFBRE_00964: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium dentium Bd1

Site:
position = -75
score = 5.86276
sequence = ATGCATAATTATGCAA

Gene: BDP_1296: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -61
score = 4.19367
sequence = ATGCAGTTTCATGCAT

Gene: BIFGAL_01788: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium longum NCC2705

Site:
position = -72
score = 5.75693
sequence = CTGCATAAATATGCAA

Gene: BL1064: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -66
score = 5.75693
sequence = CTGCATAAATATGCAA

Gene: Blon_1881: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Gardnerella vaginalis 409-05
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0924: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01036: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1246: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005480: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00965: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium dentium Bd1

Gene: BDP_1295: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01787: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium longum NCC2705

Gene: BL1063: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1880: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Gardnerella vaginalis 409-05
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
argB
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0923: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01037: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1247: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005475: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00966: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium dentium Bd1

Gene: BDP_1294: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01786: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium longum NCC2705

Gene: BL1062: Acetylglutamate kinase (EC 2.7.2.8)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1879: Acetylglutamate kinase (EC 2.7.2.8)
 
Gardnerella vaginalis 409-05
Acetylglutamate kinase (EC 2.7.2.8)
argD
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0922: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01038: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1248: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005470: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00967: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium dentium Bd1

Gene: BDP_1293: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01785: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium longum NCC2705

Gene: BL1061: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1878: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
 
Gardnerella vaginalis 409-05
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)
argF
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0921: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01039: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1249: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005465: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00968: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium dentium Bd1

Gene: BDP_1292: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01784: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium longum NCC2705

Gene: BL1060: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1877: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Gardnerella vaginalis 409-05
Ornithine carbamoyltransferase (EC 2.1.3.3)
argR
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0920: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01040: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1250: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005460: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00969: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium dentium Bd1

Gene: BDP_1291: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01783: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium longum NCC2705

Gene: BL1059: Arginine metabolism transcriptional regulator ArgR, ArgR family
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1876: Arginine metabolism transcriptional regulator ArgR, ArgR family
*
Gardnerella vaginalis 409-05

Site:
position = -67
score = 4.25629
sequence = TAGCATTTTCATGCAT

Gene: HMPREF0424_0673: Arginine metabolism transcriptional regulator ArgR, ArgR family
Arginine metabolism transcriptional regulator ArgR, ArgR family
 
CRON 2.
artX
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0470: Predicted arginine ABC transporter, substrate-binding protein
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01583: Predicted arginine ABC transporter, substrate-binding protein
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -144
score = 4.84017
sequence = ATGCATATCTAGGCAT

Site:
position = -134
score = 4.71634
sequence = AGGCATATGTATACAG

Gene: BLA_1081: Predicted arginine ABC transporter, substrate-binding protein
 
Bifidobacterium bifidum NCIMB 41171
*
Bifidobacterium breve DSM 20213

Site:
position = -87
score = 5.33411
sequence = TTGTATATGTATGCAC

Site:
position = -67
score = 5.08449
sequence = GTGTATAAATATGCTT

Gene: BIFBRE_00755: Predicted arginine ABC transporter, substrate-binding protein
 
Bifidobacterium dentium Bd1

Gene: BDP_0646: Predicted arginine ABC transporter, substrate-binding protein
*
Bifidobacterium gallicum DSM 20093

Site:
position = -90
score = 3.93223
sequence = ATGCTTGCTTGTGCAT

Gene: BIFGAL_01041: Predicted arginine ABC transporter, substrate-binding protein
*
Bifidobacterium longum NCC2705

Site:
position = -67
score = 5.08449
sequence = GTGTATAAATATGCTT

Site:
position = -87
score = 5.33411
sequence = TTGTATATGTATGCAC

Gene: BL1178: Predicted arginine ABC transporter, substrate-binding protein
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -87
score = 5.33411
sequence = TTGTATATGTATGCAC

Site:
position = -67
score = 5.08449
sequence = GTGTATAAATATGCTT

Gene: Blon_2021: Predicted arginine ABC transporter, substrate-binding protein
*
Gardnerella vaginalis 409-05

Site:
position = -63
score = 5.10867
sequence = GTGTATAGTTATACAC

Site:
position = -53
score = 3.96618
sequence = ATACACATTAATGCAA

Gene: HMPREF0424_1068: Predicted arginine ABC transporter, substrate-binding protein
Predicted arginine ABC transporter, substrate-binding protein
artY
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0471: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01582: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1082: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00756: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium dentium Bd1

Gene: BDP_0647: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01042: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium longum NCC2705

Gene: BL1177: Predicted arginine ABC transporter, permease protein
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2020: Predicted arginine ABC transporter, permease protein
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1067: Predicted arginine ABC transporter, permease protein
Predicted arginine ABC transporter, permease protein
artZ
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0472: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01581: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1083: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00757: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium dentium Bd1

Gene: BDP_0648: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01043: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium longum NCC2705

Gene: BL1176: Predicted arginine ABC transporter, ATP-binding protein
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2019: Predicted arginine ABC transporter, ATP-binding protein
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1066: Predicted arginine ABC transporter, ATP-binding protein
Predicted arginine ABC transporter, ATP-binding protein
 
CRON 3.
argG
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -46
score = 5.64777
sequence = ATGCATAAATATACAG

Gene: BAD_0919: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -62
score = 4.93419
sequence = GTGCATAAATATACGC

Site:
position = -42
score = 4.37493
sequence = CTGTATATACTTGCAT

Gene: BIFANG_01042: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -64
score = 5.22196
sequence = ATGAATAAATATACAG

Gene: BLA_1251: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -63
score = 5.62243
sequence = TTGCATAAATATACAG

Gene: BbifN4_010100005455: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium breve DSM 20213

Site:
position = -72
score = 5.62243
sequence = GTGCATAAATATACAA

Site:
position = -52
score = 4.24042
sequence = CTGTATATACTTACAT

Gene: BIFBRE_00970: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium dentium Bd1

Site:
position = -64
score = 5.64777
sequence = ATGCATAAATATACAG

Gene: BDP_1290: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -29
score = 5.81763
sequence = ATGCATAATTATGCAG

Gene: BIFGAL_01782: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium longum NCC2705

Site:
position = -72
score = 5.5773
sequence = GTGCATAAATATACAG

Site:
position = -52
score = 4.37493
sequence = CTGTATATACTTGCAT

Gene: BL1058: Argininosuccinate synthase (EC 6.3.4.5)
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -72
score = 5.5773
sequence = GTGCATAAATATACAG

Site:
position = -52
score = 4.37493
sequence = CTGTATATACTTGCAT

Gene: Blon_1875: Argininosuccinate synthase (EC 6.3.4.5)
*
Gardnerella vaginalis 409-05

Site:
position = -37
score = 4.67848
sequence = TTGTTTATTTATTCAA

Site:
position = -158
score = 3.89794
sequence = ATGTATAACTATAATT

Gene: HMPREF0424_0674: Argininosuccinate synthase (EC 6.3.4.5)
Argininosuccinate synthase (EC 6.3.4.5)
BIFGAL_01781
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01781: hypothetical protein
 
Bifidobacterium longum NCC2705
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Gardnerella vaginalis 409-05
hypothetical protein
BIFGAL_01780
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01780: hypothetical protein
 
Bifidobacterium longum NCC2705
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Gardnerella vaginalis 409-05
hypothetical protein
argH
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0918: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_01043: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1252: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100005409: Argininosuccinate lyase (EC 4.3.2.1)
*
Bifidobacterium breve DSM 20213

Site:
position = -207
score = 4.6978
sequence = TTGCGTATATATTCAA

Gene: BIFBRE_00979: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium dentium Bd1

Gene: BDP_1289: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01779: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium longum NCC2705

Gene: BL1057: Argininosuccinate lyase (EC 4.3.2.1)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_1874: Argininosuccinate lyase (EC 4.3.2.1)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0675: Argininosuccinate lyase (EC 4.3.2.1)
Argininosuccinate lyase (EC 4.3.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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