Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UdhR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 3 3
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia sp. 383 3 3
Burkholderia pseudomallei K96243
Burkholderia phymatum STM815 3 3
Burkholderia xenovorans LB400
Burkholderia vietnamiensis G4 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
exuT
*
Burkholderia cepacia AMMD

Site:
position = -144
score = 6.24171
sequence = TTGAAAAACGTTTTCCAT

Gene: Bamb_5234: Hexuronate transporter, MFS superfamily
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -134
score = 5.82359
sequence = CTGAAAAACGTTTTCCAG

Gene: Bcep18194_B2718: Hexuronate transporter, MFS superfamily
 
Burkholderia pseudomallei K96243
*
Burkholderia phymatum STM815

Site:
position = -137
score = 6.55028
sequence = TAGAAAAACGTTTTCCAA

Gene: Bphy_5675: Hexuronate transporter, MFS superfamily
 
Burkholderia xenovorans LB400
*
Burkholderia vietnamiensis G4

Site:
position = -143
score = 4.58129
sequence = TTGGAAAAACGTTTTCCA

Site:
position = -142
score = 6.10904
sequence = TGGAAAAACGTTTTCCAC

Gene: Bcep1808_3987: Hexuronate transporter, MFS superfamily
Hexuronate transporter, MFS superfamily
 
CRON 2.
udhR
*
Burkholderia cepacia AMMD

Site:
position = -157
score = 6.66563
sequence = TCGGAAAACGTTTTCCAA

Gene: Bamb_5235: Transcriptional regulator for hexuronate utilization, LacI family
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -157
score = 6.66563
sequence = TCGGAAAACGTTTTCCAA

Gene: Bcep18194_B2717: Transcriptional regulator for hexuronate utilization, LacI family
 
Burkholderia pseudomallei K96243
*
Burkholderia phymatum STM815

Site:
position = -106
score = 6.55608
sequence = TAGGAAAACGTTTTCCGA

Gene: Bphy_5674: Transcriptional regulator for hexuronate utilization, LacI family
 
Burkholderia xenovorans LB400
*
Burkholderia vietnamiensis G4

Site:
position = -157
score = 6.2475
sequence = CCGGAAAACGTTTTCCAA

Gene: Bcep1808_3988: Transcriptional regulator for hexuronate utilization, LacI family
Transcriptional regulator for hexuronate utilization, LacI family
 
CRON 3.
udh
*
Burkholderia cepacia AMMD

Site:
position = -86
score = 6.66563
sequence = TTGGAAAACGTTTTCCGA

Gene: Bamb_5236: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia glumae BGR1

Gene: bglu_1g09950: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -53
score = 6.66563
sequence = TTGGAAAACGTTTTCCGA

Gene: Bcep18194_B2716: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia pseudomallei K96243
*
Burkholderia phymatum STM815

Site:
position = -41
score = 6.55608
sequence = TCGGAAAACGTTTTCCTA

Gene: Bphy_5673: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1800: Uronate dehydrogenase (EC 1.1.1.203)
*
Burkholderia vietnamiensis G4

Site:
position = -87
score = 6.2475
sequence = TTGGAAAACGTTTTCCGG

Gene: Bcep1808_3989: Uronate dehydrogenase (EC 1.1.1.203)
Uronate dehydrogenase (EC 1.1.1.203)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD