Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GalR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode:
Biological process: Galactose utilization
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697 4 2
Bifidobacterium adolescentis ATCC 15703 4 2
Bifidobacterium angulatum DSM 20098 1 1
Bifidobacterium animalis subsp. lactis AD011 4 2
Bifidobacterium bifidum NCIMB 41171 4 2
Bifidobacterium breve DSM 20213 3 1
Bifidobacterium dentium Bd1 4 2
Bifidobacterium gallicum DSM 20093 3 1
Bifidobacterium longum NCC2705 4 2
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
galE1
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -124
score = 7.68911
sequence = TTGTGCG-(3)-ATGTTCG

Gene: Blon_0538: UDP-glucose 4-epimerase (EC 5.1.3.2)
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -69
score = 7.12019
sequence = GTGTGCG-(3)-GTGTTCA

Gene: BAD_0391: UDP-glucose 4-epimerase (EC 5.1.3.2)
 
Bifidobacterium angulatum DSM 20098
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -106
score = 6.8822
sequence = GTGTTCG-(3)-GTGTTCG

Gene: BLA_0437: UDP-glucose 4-epimerase (EC 5.1.3.2)
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -149
score = 6.45893
sequence = TTGTTCT-(3)-ATGTTCA

Gene: BbifN4_010100008300: UDP-glucose 4-epimerase (EC 5.1.3.2)
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -144
score = 7.57888
sequence = ATGTGCG-(3)-ATGTTCA

Gene: BDP_0531: UDP-glucose 4-epimerase (EC 5.1.3.2)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00919: UDP-glucose 4-epimerase (EC 5.1.3.2)
*
Bifidobacterium longum NCC2705

Site:
position = -124
score = 7.68911
sequence = TTGTGCG-(3)-ATGTTCG

Gene: BL1671: UDP-glucose 4-epimerase (EC 5.1.3.2)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1119: UDP-glucose 4-epimerase (EC 5.1.3.2)
UDP-glucose 4-epimerase (EC 5.1.3.2)
 
CRON 2.
galR
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -122
score = 6.45697
sequence = ATGTGCG-(3)-TTGCGTG

Site:
position = -18
score = 7.54511
sequence = GTGTGCG-(3)-ATGTTCA

Gene: Blon_2064: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -103
score = 6.77451
sequence = ACGTTCG-(3)-TTGTTCG

Site:
position = 0
score = 7.57888
sequence = ATGTGCG-(3)-ATGTTCA

Gene: BAD_1333: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium angulatum DSM 20098

Site:
position = -18
score = 6.93857
sequence = GCGTGCG-(3)-ATGTGCA

Gene: BIFANG_00824: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = 0
score = 7.72288
sequence = ATGTGCG-(3)-ATGTTCG

Site:
position = -72
score = 6.67013
sequence = ATATGCG-(3)-TTGTTCG

Gene: BLA_0557: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -117
score = 7.57888
sequence = ATGTGCG-(3)-ATGTTCA

Gene: BbifN4_010100001540: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium breve DSM 20213

Site:
position = -18
score = 7.68911
sequence = GTGTGCG-(3)-ATGTTCG

Site:
position = -122
score = 6.91599
sequence = ATGTGCG-(3)-TTGCGCG

Gene: BIFBRE_00714: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium dentium Bd1

Site:
position = -18
score = 7.68911
sequence = GTGTGCG-(3)-ATGTTCG

Site:
position = -111
score = 6.97872
sequence = GCGTGCG-(3)-TTGTGCG

Gene: BDP_1796: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium gallicum DSM 20093

Site:
position = -75
score = 7.57888
sequence = ATGTGCG-(3)-ATGTTCA

Gene: BIFGAL_00449: Transcriptional regulator of galactose metabolism, DeoR family
*
Bifidobacterium longum NCC2705

Site:
position = 63
score = 7.68911
sequence = GTGTGCG-(3)-ATGTTCG

Site:
position = -40
score = 6.91599
sequence = ATGTGCG-(3)-TTGCGCG

Gene: BL1212: Transcriptional regulator of galactose metabolism, DeoR family
 
Gardnerella vaginalis 409-05
Transcriptional regulator of galactose metabolism, DeoR family
galT1
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2063: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1332: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0556: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100001545: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00715: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium dentium Bd1

Gene: BDP_1795: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00450: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Bifidobacterium longum NCC2705

Gene: BL1211: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
 
Gardnerella vaginalis 409-05
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
galK
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2062: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1331: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0555: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100001550: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00716: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium dentium Bd1

Gene: BDP_1794: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00451: Galactokinase (EC 2.7.1.6)
 
Bifidobacterium longum NCC2705

Gene: BL1210: Galactokinase (EC 2.7.1.6)
 
Gardnerella vaginalis 409-05
Galactokinase (EC 2.7.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD