Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bll2166 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 6 2
Bradyrhizobium sp. BTAi1 10 2
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234 10 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
blr2167
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -102
score = 5.60282
sequence = AGTGAACCAGATTCATC

Site:
position = -199
score = 4.81735
sequence = GGTGAAGCTCATTCGCC

Gene: blr2167: putative short chain dehydrogenase/reductase
*
Bradyrhizobium sp. BTAi1

Site:
position = -101
score = 5.60282
sequence = AGTGAACCAGATTCATC

Gene: BBta_3267: putative short chain dehydrogenase/reductase
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5766: putative short chain dehydrogenase/reductase
 2
Mesorhizobium sp. BNC1

Gene: Meso_3619: putative short chain dehydrogenase/reductase

Gene: Meso_3616: putative short chain dehydrogenase/reductase
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -141
score = 5.68254
sequence = AGTGAATCAGATTCACC

Gene: NGR_a02430: putative short chain dehydrogenase/reductase
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
*
Xanthobacter autotrophicus Py2

Site:
position = -1
score = 5.35802
sequence = GATGAACCCAGTTCACC

Gene: Xaut_1541: putative short chain dehydrogenase/reductase
putative short chain dehydrogenase/reductase
tktA
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2168: Transketolase, N-terminal section (EC 2.2.1.1)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3268: Transketolase, N-terminal section (EC 2.2.1.1)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5765: Transketolase, N-terminal section (EC 2.2.1.1)
 
Mesorhizobium sp. BNC1

Gene: Meso_3617: Transketolase, N-terminal section (EC 2.2.1.1)
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02440: Transketolase, N-terminal section (EC 2.2.1.1)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1540: Transketolase, N-terminal section (EC 2.2.1.1)
Transketolase, N-terminal section (EC 2.2.1.1)
tktB
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2169: Transketolase, C-terminal section (EC 2.2.1.1)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3269: Transketolase, C-terminal section (EC 2.2.1.1)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5764: Transketolase, C-terminal section (EC 2.2.1.1)
 
Mesorhizobium sp. BNC1

Gene: Meso_3618: Transketolase, C-terminal section (EC 2.2.1.1)
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02450: Transketolase, C-terminal section (EC 2.2.1.1)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1539: Transketolase, C-terminal section (EC 2.2.1.1)
Transketolase, C-terminal section (EC 2.2.1.1)
blr2170
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2170: putative TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3270: putative TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_3614: putative TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02460: putative TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1537: putative TRAP-type C4-dicarboxylate transport system, periplasmic component
putative TRAP-type C4-dicarboxylate transport system, periplasmic component
blr2171
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2171: TRAP-type C4-dicarboxylate transport system, large permease component
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3271: TRAP-type C4-dicarboxylate transport system, large permease component
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_3615: TRAP-type C4-dicarboxylate transport system, large permease component
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02470: TRAP-type C4-dicarboxylate transport system, large permease component
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1536: TRAP-type C4-dicarboxylate transport system, large permease component
TRAP-type C4-dicarboxylate transport system, large permease component
BBta_3272
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3272: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5770: ABC TRANSPORTER ATP-BINDING PROTEIN
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02480: probable ABC transporter ATP-binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
BBta_3273
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3273: Probable ABC transporter permease protein y4mJ
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5769: ABC TRANSPORTER PERMEASE PROTEIN
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02490: probable ABC transporter permease
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Probable ABC transporter permease protein y4mJ
BBta_3274
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3274: Probable ABC transporter periplasmic-binding protein y4mI precursor
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5768: ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02500: probable ABC transporter periplasmic binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Probable ABC transporter periplasmic-binding protein y4mI precursor
BBta_3275
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_3275: Uncharacterized protein y4mH
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll5767: Y4mH
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_a02510: hypothetical 33.9 kd protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Uncharacterized protein y4mH
SMc00274
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1538: 3-hydroxyisobutyrate dehydrogenase
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
CRON 2.
bll2166
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -23
score = 5.60282
sequence = GATGAATCTGGTTCACT

Gene: bll2166: Transcriptional regulator, LysR family
*
Bradyrhizobium sp. BTAi1

Site:
position = -23
score = 5.60282
sequence = GATGAATCTGGTTCACT

Gene: BBta_3266: Transcriptional regulator, LysR family
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -23
score = 5.68254
sequence = GGTGAATCTGATTCACT

Gene: NGR_a02420: Transcriptional regulator, LysR family
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
*
Xanthobacter autotrophicus Py2

Site:
position = -27
score = 5.35802
sequence = GGTGAACTGGGTTCATC

Gene: Xaut_1542: Transcriptional regulator, LysR family
Transcriptional regulator, LysR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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