Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Clostridia-2

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795 6 3
Clostridium difficile 630 6 3
Clostridium hiranonis DSM 13275 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribU
*
Clostridium bartlettii DSM 16795

Site:
position = -231
score = 119.42
sequence = AAAAAATCTTCGGGG...

Gene: CLOBAR_00719: Substrate-specific component RibU of riboflavin ECF transporter
*
Clostridium difficile 630

Site:
position = -268
score = 123.2
sequence = AAGATCTTCGGGGCA...

Gene: CD0147: Substrate-specific component RibU of riboflavin ECF transporter
*
Clostridium hiranonis DSM 13275

Site:
position = -311
score = 112.62
sequence = GATGTCTTCAGGGCA...

Gene: CLOHIR_01113: Substrate-specific component RibU of riboflavin ECF transporter
Substrate-specific component RibU of riboflavin ECF transporter
 
CRON 2.
ribZ
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -289
score = 97.53
sequence = TTTTTCTTCATAAAC...

Gene: CD3299: Riboflavin transporter, COG2814 family
 
Clostridium hiranonis DSM 13275
Riboflavin transporter, COG2814 family
 
CRON 3.
ribD
*
Clostridium bartlettii DSM 16795

Site:
position = -253
score = 120.74
sequence = GATTATTCTTCGGGG...

Gene: CLOBAR_00909: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Clostridium difficile 630

Site:
position = -254
score = 118.75
sequence = ACTTAATCTTCGGGG...

Gene: CD1700: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Clostridium hiranonis DSM 13275

Site:
position = -211
score = 123.02
sequence = ACTATCTTCAGGGCA...

Gene: CLOHIR_00483: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00908: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Clostridium difficile 630

Gene: CD1699: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00484: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00907: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Clostridium difficile 630

Gene: CD1698: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00485: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00906: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Clostridium difficile 630

Gene: CD1697: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00486: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 4.
xylB
*
Clostridium bartlettii DSM 16795

Site:
position = -211
score = 121.32
sequence = TATATGTCTTCGGGG...

Gene: CLOBAR_00632: Sugar (pentulose and hexulose) kinases
 
Clostridium difficile 630
 
Clostridium hiranonis DSM 13275
Sugar (pentulose and hexulose) kinases
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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