Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824 6 4
Clostridium beijerincki NCIMB 8052 3 2
Clostridium botulinum A str. ATCC 3502 4 2
Clostridium butyricum 5521 5 2
Clostridium kluyveri DSM 555 2 1
Clostridium novyi NT 4 2
Clostridium perfringens ATCC 13124 3 2
Clostridium tetani E88 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJ
*
Clostridium acetobutylicum ATCC 824

Site:
position = -65
score = 5.86031
sequence = ATACAATATATAGTGT

Site:
position = -34
score = 5.3013
sequence = CCACTATATATAGTTT

Gene: CAC1047: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -171
score = 4.50222
sequence = TAACTATACATTGTAT

Site:
position = -141
score = 5.89336
sequence = ATACTATATATTGTAT

Gene: CTC00574: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
CRON 2.
ligA2
*
Clostridium acetobutylicum ATCC 824

Site:
position = -64
score = 5.47484
sequence = ATACTATATATAGTGC

Site:
position = -97
score = 5.51391
sequence = AAACTATATATTGTGT

Gene: CAC1195: DNA ligase (EC 6.5.1.2)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
DNA ligase (EC 6.5.1.2)
 
CRON 3.
nrdA
*
Clostridium acetobutylicum ATCC 824

Site:
position = -69
score = 4.36812
sequence = AAGCGATATATTGTGG

Site:
position = -28
score = 5.38271
sequence = ATACTACATATTGTGG

Gene: CAC3277: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -71
score = 5.15992
sequence = ATACGATATGTTGTAT

Site:
position = -30
score = 5.38271
sequence = ACACAATATGTAGTAG

Gene: Cbei_0194: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -176
score = 5.54347
sequence = ATACAATATATAGTGA

Site:
position = -145
score = 5.35705
sequence = ATACAATATATAGAGT

Gene: CBO2814: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Clostridium butyricum 5521

Site:
position = -70
score = 5.15992
sequence = ATACGATATGTTGTAT

Site:
position = -28
score = 5.1427
sequence = ACACAAGATATAGTGG

Gene: CBY_2909: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Clostridium kluyveri DSM 555
*
Clostridium novyi NT

Site:
position = -200
score = 4.38806
sequence = CTACTTTATTTTGTAA

Gene: NT01CX_2366: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Clostridium perfringens ATCC 13124

Site:
position = -27
score = 5.32313
sequence = TTACTATATATTGTGG

Gene: CPF_2671: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Clostridium tetani E88
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
CBY_2910
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_2910: hypothetical protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
hypothetical protein
nrdB
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3276: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0195: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2813: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium butyricum 5521

Gene: CBY_2911: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_2365: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2670: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium tetani E88
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 4.
nrdD
*
Clostridium acetobutylicum ATCC 824

Site:
position = 0
score = 4.50953
sequence = ATGCTAAATGTAGTAA

Site:
position = -32
score = 5.00288
sequence = GTACAAGATATAGTGT

Gene: CAC0480: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium beijerincki NCIMB 8052

Site:
position = 0
score = 4.83695
sequence = ATGCTATATGTTGTGA

Site:
position = -32
score = 5.4671
sequence = ATACTATATATTGTGC

Gene: Cbei_0068: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -32
score = 5.37497
sequence = ACACAATATGTTGTAG

Site:
position = 0
score = 4.83695
sequence = ATGCTATATGTTGTGA

Gene: CBO0094: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium butyricum 5521

Site:
position = -32
score = 5.45936
sequence = ATACAATATATTGTGC

Site:
position = 0
score = 4.83695
sequence = ATGCTATATGTTGTGA

Gene: CBY_2237: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium kluyveri DSM 555

Site:
position = -32
score = 5.63997
sequence = ACACAATATATAGTAG

Site:
position = 0
score = 4.57969
sequence = ATGCTACATGTTGTGA

Gene: CKL_3757: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium novyi NT

Site:
position = -31
score = 4.98175
sequence = GTACAATATGTTGTGG

Gene: NT01CX_1076: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium perfringens ATCC 13124

Site:
position = -32
score = 4.78253
sequence = GTACAAGATATAGTGG

Site:
position = 0
score = 4.57969
sequence = ATGCTACATGTTGTGA

Gene: CPF_2830: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium tetani E88

Site:
position = -32
score = 5.66528
sequence = ATACAATATATTGTAG

Site:
position = 0
score = 4.87
sequence = ATGCTATATGTTGTAA

Gene: CTC00257: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0481: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0071: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0095: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium butyricum 5521

Gene: CBY_2234: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium kluyveri DSM 555

Gene: CKL_3756: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium novyi NT

Gene: NT01CX_1077: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2826: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium tetani E88

Gene: CTC00258: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD