Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR3 - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 1 1
Arthrobacter chlorophenolicus A6 1 1
Arthrobacter sp. FB24 1 1
Beutenbergia cavernae DSM 12333 1 1
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2 1 1
Clavibacter michiganensis subsp. michiganensis NCPPB 382 1 1
Janibacter sp. HTCC2649 1 1
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2364
*
Arthrobacter aurescens TC1

Site:
position = -60
score = 13.0892
sequence = AAGACCAGTAT-(3)-AAACTGGCTAT-(7)-AAGGCCAGTTT

Gene: AAur_0775: predicted membrane protein
*
Arthrobacter chlorophenolicus A6

Site:
position = -60
score = 12.5112
sequence = AGGGCCAGTAT-(3)-AAACTGGCTAT-(7)-AATGCCAGTTG

Gene: Achl_0749: predicted membrane protein
*
Arthrobacter sp. FB24

Site:
position = -61
score = 12.1468
sequence = GTAGCCAGTAT-(3)-AAACTGGATAT-(7)-AAGGCCAGTTT

Gene: Arth_0621: predicted membrane protein
*2
Beutenbergia cavernae DSM 12333

Gene: Bcav_3825: predicted membrane protein

Site:
position = 17
score = 11.2712
sequence = CGGTCCAGTGT-(4)-GAAGTGGCTAT-(7)-CAGGCCAATCG

Gene: Bcav_3925: predicted membrane protein
 
Brachybacterium faecium DSM 4810

Gene: Bfae_12710: predicted membrane protein
*
Brevibacterium linens BL2

Site:
position = -89
score = 11.7694
sequence = ACGACCACTTT-(4)-CAATTGGACCT-(7)-AAGACCAGTTC

Gene: BlinB01002591: predicted membrane protein
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -62
score = 10.1389
sequence = GAGGCCACAGC-(4)-CGATTGGCATC-(7)-GCAACCCCCGG

Gene: CMM_0762: predicted membrane protein
*
Janibacter sp. HTCC2649

Site:
position = -43
score = 12.7696
sequence = GAGGCCACTGT-(4)-CAAGTGGCCAT-(7)-AGGGCCACTTG

Gene: JNB_06009: predicted membrane protein
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_21650: predicted membrane protein
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
predicted membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD