Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR3 - Mycobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium abscessus ATCC 19977 1 1
Mycobacterium avium 104
Mycobacterium leprae TN
Mycobacterium marinum M
Mycobacterium tuberculosis H37Rv
Mycobacterium smegmatis str. MC2 155 2 2
Mycobacterium flavescens PYR-GCK 1 1
Mycobacterium sp. JLS 1 1
Mycobacterium vanbaalenii PYR-1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2364
*
Mycobacterium abscessus ATCC 19977

Site:
position = -61
score = 14.6045
sequence = AAAGCCAGTGT-(4)-CAACTGGCTAT-(7)-CAAGCCAGTTG

Gene: MAB_3386c: putative integral membrane protein
 
Mycobacterium avium 104
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium tuberculosis H37Rv
*2
Mycobacterium smegmatis str. MC2 155

Site:
position = -203
score = 15.7153
sequence = GAGGCCAGTAT-(4)-CGACTGGCTAT-(7)-CAAGCCAGATC

Gene: MSMEG_2325: putative integral membrane protein

Site:
position = -203
score = 15.7153
sequence = GAGGCCAGTAT-(4)-CGACTGGCTAT-(7)-CAAGCCAGATC

Gene: MSMEG_1045: putative integral membrane protein
*
Mycobacterium flavescens PYR-GCK

Site:
position = -10
score = 14.3268
sequence = GAGGCCAGTAT-(4)-AGACTGGCTAT-(7)-CAAGCCACTTC

Gene: Mflv_4274: putative integral membrane protein
*
Mycobacterium sp. JLS

Site:
position = -215
score = 16.0225
sequence = GCAGCCAGTAT-(4)-CAACTGGCTAT-(7)-CAAGCCAGTCG

Gene: Mjls_1836: putative integral membrane protein
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -214
score = 15.3365
sequence = GAGGCCAGTAT-(4)-GAACTGGATAT-(7)-CAAGCCAGATG

Gene: Mvan_2085: putative integral membrane protein
putative integral membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD