Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338 1 1
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Frankia sp. EAN1pec
Nakamurella multipartita DSM 44233 4 1
Nocardioides sp. JS614 1 1
Propionibacterium acnes KPA171202
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2364
 
Actinosynnema mirum DSM 43827

Gene: Amir_6791: putative integral membrane protein
 
Saccharomonospora viridis DSM 43017

Gene: Svir_02390: putative integral membrane protein
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -55
score = 11.4999
sequence = GAGTCCAATTA-(4)-ATATTGGACTT-(7)-AATACCAATAT

Gene: SACE_7002: putative integral membrane protein
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
*
Nakamurella multipartita DSM 44233

Site:
position = -61
score = 12.3813
sequence = CAGACCAGTTT-(4)-CAACTGGTACT-(7)-CAGACCACATT

Gene: Namu_3401: putative integral membrane protein
*
Nocardioides sp. JS614

Site:
position = -60
score = 13.3445
sequence = CAGGCCACTCT-(4)-CGATTGGCTAT-(7)-AAGGCCAATCT

Gene: Noca_3372: putative integral membrane protein
 
Propionibacterium acnes KPA171202
putative integral membrane protein
Amir_5405
 
Actinosynnema mirum DSM 43827

Gene: Amir_5405: putative integral membrane protein
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_4270: putative integral membrane protein
 
Acidothermus cellulolyticus 11B

Gene: Acel_1895: putative integral membrane protein
 
Frankia sp. CcI3

Gene: Francci3_3909: putative integral membrane protein
 2
Frankia sp. EAN1pec

Gene: Franean1_2002: putative integral membrane protein

Gene: Franean1_0820: putative integral membrane protein
 
Nakamurella multipartita DSM 44233

Gene: Namu_3400: putative integral membrane protein
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
putative integral membrane protein
pdxT
 
Actinosynnema mirum DSM 43827

Gene: Amir_2109: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_2017: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Acidothermus cellulolyticus 11B

Gene: Acel_1347: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Frankia sp. CcI3

Gene: Francci3_1367: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Frankia sp. EAN1pec

Gene: Franean1_5148: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 2
Nakamurella multipartita DSM 44233

Gene: Namu_2036: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Gene: Namu_3399: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Nocardioides sp. JS614

Gene: Noca_2382: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Propionibacterium acnes KPA171202

Gene: PPA0966: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Amir_2110
 
Actinosynnema mirum DSM 43827

Gene: Amir_2110: protein of unknown function DUF28
 
Saccharomonospora viridis DSM 43017

Gene: Svir_15040: protein of unknown function DUF28
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_2018: protein of unknown function DUF28
 
Acidothermus cellulolyticus 11B

Gene: Acel_1346: protein of unknown function DUF28
 
Frankia sp. CcI3

Gene: Francci3_1368: protein of unknown function DUF28
 
Frankia sp. EAN1pec

Gene: Franean1_5147: protein of unknown function DUF28
 
Nakamurella multipartita DSM 44233

Gene: Namu_3398: protein of unknown function DUF28
 
Nocardioides sp. JS614

Gene: Noca_2383: protein of unknown function DUF28
 
Propionibacterium acnes KPA171202

Gene: PPA1157: protein of unknown function DUF28
protein of unknown function DUF28
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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