Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cpin_2755 - Sphingobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Salinibacter ruber DSM 13855
Pedobacter sp. BAL39 1 1
Pedobacter heparinus DSM 2366
Microscilla marina ATCC 23134
Algoriphagus sp. PR1
Chitinophaga pinensis DSM 2588 3 1
Cytophaga hutchinsonii ATCC 33406
Dyadobacter fermentans DSM 18053
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2128
 
Salinibacter ruber DSM 13855
 
Pedobacter sp. BAL39
 
Pedobacter heparinus DSM 2366
 
Microscilla marina ATCC 23134
 
Algoriphagus sp. PR1
*2
Chitinophaga pinensis DSM 2588

Gene: Cpin_2179: alkylhydroperoxidase like protein, AhpD family

Site:
position = -82
score = 12.3158
sequence = ATCTGTACTA-(13)-ATCTGTATGA-(6)-TAGTACAATC

Gene: Cpin_3546: alkylhydroperoxidase like protein, AhpD family
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053

Gene: Dfer_3098: alkylhydroperoxidase like protein, AhpD family
alkylhydroperoxidase like protein, AhpD family
COG1182 (AcpD)
 
Salinibacter ruber DSM 13855
 
Pedobacter sp. BAL39
 
Pedobacter heparinus DSM 2366
 
Microscilla marina ATCC 23134
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_3545: NAD(P)H dehydrogenase (quinone)/Acyl carrier protein phosphodiesterase
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053
NAD(P)H dehydrogenase (quinone)/Acyl carrier protein phosphodiesterase
Cpin_2758
 
Salinibacter ruber DSM 13855
 
Pedobacter sp. BAL39
 
Pedobacter heparinus DSM 2366
 
Microscilla marina ATCC 23134
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_3544: GCN5-related N-acetyltransferase
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053
GCN5-related N-acetyltransferase
 
CRON 2.
COG702
 
Salinibacter ruber DSM 13855
*
Pedobacter sp. BAL39

Site:
position = -236
score = 11.9492
sequence = GTCTGGACTG-(13)-AGTTGGATGG-(6)-CAATCCAAAC

Gene: PBAL39_16229: predicted nucleoside-diphosphate-sugar epimerase/NmrA family protein
 
Pedobacter heparinus DSM 2366
 
Microscilla marina ATCC 23134
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588
 
Cytophaga hutchinsonii ATCC 33406
 2
Dyadobacter fermentans DSM 18053

Gene: Dfer_5449: predicted nucleoside-diphosphate-sugar epimerase/NmrA family protein

Gene: Dfer_0905: predicted nucleoside-diphosphate-sugar epimerase/NmrA family protein
predicted nucleoside-diphosphate-sugar epimerase/NmrA family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD