Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU0744 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028
Desulfovibrio desulfuricans G20 1 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough 1 1
Desulfovibrio vulgaris str. Miyazaki F 1 1
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU0682
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1321: DNA-binding protein, putative
*
Desulfovibrio desulfuricans G20

Site:
position = -405
score = 4.19054
sequence = TGTAACA

Site:
position = -398
score = 3.92096
sequence = TGTGACA

Site:
position = -439
score = 3.42163
sequence = CGTCACA

Site:
position = -432
score = 4.19054
sequence = TGTTACA

Gene: Dde_2949: DNA-binding protein, putative
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0868: DNA-binding protein, putative
 
Desulfovibrio magneticus RS-1

Gene: DMR_23570: DNA-binding protein, putative
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_03022: DNA-binding protein, putative
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0117: DNA-binding protein, putative
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -258
score = 3.92096
sequence = TGTGACA

Site:
position = -280
score = 3.92096
sequence = TGTGACA

Site:
position = -289
score = 4.19054
sequence = TGTAACA

Site:
position = -313
score = 4.19054
sequence = TGTTACA

Gene: null: DNA-binding protein, putative
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -385
score = 4.19054
sequence = TGTAACA

Site:
position = -377
score = 3.69121
sequence = TGTTACG

Site:
position = -352
score = 4.19054
sequence = TGTAACA

Site:
position = -345
score = 3.69121
sequence = TGTTACG

Gene: DvMF_2676: DNA-binding protein, putative
 
Lawsonia intracellularis PHE/MN1-00
DNA-binding protein, putative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD