Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog YrdX - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1 5 1
Polaromonas naphthalenivorans CJ2 6 1
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 7 1
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF02635
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
*
Methylibium petroleiphilum PM1

Site:
position = -271
score = 7.1319
sequence = GTTGATCG-(5)-ATTGATCG

Site:
position = -139
score = 7.23988
sequence = CTTGATCG-(3)-ATTGATCG

Site:
position = -92
score = 4.82266
sequence = GTGGCACA-(3)-CGTGCAAA

Gene: Mpe_A3479: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
*
Polaromonas naphthalenivorans CJ2

Site:
position = -320
score = 5.06978
sequence = ATTGCATG-(5)-ATTGCATT

Site:
position = -224
score = 6.12774
sequence = GTTTATCG-(5)-ATTGATTG

Site:
position = -105
score = 6.59385
sequence = ATTGATTG-(3)-CTTGATTG

Site:
position = -324
score = 6.59385
sequence = CTTGATTG-(5)-CTTGATTG

Gene: Pnap_2105: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -343
score = 6.80888
sequence = GTTGATCG-(5)-ATTGATTG

Site:
position = -242
score = 7.1319
sequence = GTTGATCG-(5)-ATTGATCG

Site:
position = -111
score = 7.23988
sequence = ATTGATCG-(3)-ATTGATCG

Site:
position = -74
score = 4.93064
sequence = CTGGCACA-(3)-CCTGCAAA

Gene: Vapar_0562: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
 
Verminephrobacter eiseniae EF01-2
probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
COG388
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3478: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2104: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0561: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Verminephrobacter eiseniae EF01-2
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3477: Biotin synthase-related radical SAM domain protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2103: Biotin synthase-related radical SAM domain protein
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0560: Biotin synthase-related radical SAM domain protein
 
Verminephrobacter eiseniae EF01-2
Biotin synthase-related radical SAM domain protein
COG3153
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3476: GCN5-related N-acetyltransferase
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2102: GCN5-related N-acetyltransferase
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0559: GCN5-related N-acetyltransferase
 
Verminephrobacter eiseniae EF01-2
GCN5-related N-acetyltransferase
COG2144
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3475: AIR synthase related protein/Selenophosphate synthetase-related
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2101: AIR synthase related protein/Selenophosphate synthetase-related
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0558: AIR synthase related protein/Selenophosphate synthetase-related
 
Verminephrobacter eiseniae EF01-2
AIR synthase related protein/Selenophosphate synthetase-related
Mpe_A3473
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3473: hypothetical protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2099: hypothetical protein
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0557: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
COG2072 (TrkA)
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3472: FAD dependent oxidoreductase
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2098: FAD dependent oxidoreductase
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0556: FAD dependent oxidoreductase
 
Verminephrobacter eiseniae EF01-2
FAD dependent oxidoreductase
COG438 (RfaG)
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3474: Glycosyltransferase
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2100: Glycosyltransferase
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Glycosyltransferase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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