Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU0619 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 1 1
Desulfovibrio vulgaris Hildenborough 2 1
Desulfovibrio vulgaris str. Miyazaki F 2 1
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU0617
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -276
score = 4.80516
sequence = AGGAAATAATAATTCCT

Site:
position = -245
score = 5.5272
sequence = AAGAACTAAAAGTTCTC

Site:
position = -119
score = 5.73287
sequence = AAGAACTATAAATTCTT

Gene: Desal_1330: hypothetical protein
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -253
score = 5.52553
sequence = AAGAACCTTCAGTTCTT

Site:
position = -282
score = 5.52553
sequence = AAGAACATACAGTTCTT

Site:
position = -127
score = 4.86147
sequence = CAGAACTCCAAGTTCTC

Gene: DVU0617: hypothetical protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -96
score = 5.62797
sequence = AAGAATTTTGAGTTCTT

Site:
position = -222
score = 4.9725
sequence = GGGAACTGCCAGTTCCT

Site:
position = -251
score = 4.81538
sequence = AAGAATCTCAAGTTCCG

Gene: DvMF_1509: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
DVU0616
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0616: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1508: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD