Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BPSL1086 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia mallei ATCC 23344 4 2
Burkholderia phymatum STM815 1 1
Burkholderia glumae BGR1 5 2
Burkholderia cepacia AMMD 6 2
Burkholderia pseudomallei K96243 6 2
Burkholderia sp. 383 6 2
Burkholderia vietnamiensis G4 6 2
Burkholderia xenovorans LB400 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
*
Burkholderia mallei ATCC 23344

Site:
position = -110
score = 18.7969
sequence = ATCCCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTACAG-(8)-CACTACACTCA

Gene: BMAA0052: Transporter, LysE family
*
Burkholderia phymatum STM815

Site:
position = -96
score = 17.6655
sequence = GCTCCGTACCG-(13)-AATCTGTATAG-(0)-GTACTGTACCG-(8)-CGCTACACTGT

Gene: Bphy_4474: Transporter, LysE family
*
Burkholderia glumae BGR1

Site:
position = -112
score = 17.1449
sequence = AACTCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTATCG-(8)-CGCTACACTGG

Gene: bglu_2g00680: Transporter, LysE family
*
Burkholderia cepacia AMMD

Site:
position = -102
score = 17.6913
sequence = TCCCCGTACCG-(13)-TAACTGTACCG-(0)-GTACTGTACAT-(8)-CGCTAAACTGA

Gene: Bamb_5024: Transporter, LysE family
*
Burkholderia pseudomallei K96243

Site:
position = -110
score = 18.7969
sequence = ATCCCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTACAG-(8)-CACTACACTCA

Gene: BPSS0050: Transporter, LysE family
*
Burkholderia sp. 383

Site:
position = -102
score = 18.4015
sequence = TCCCCGTACCG-(13)-CAACTGTACCG-(0)-GTACTGTACAG-(8)-CGCTAAACTGA

Gene: Bcep18194_B3122: Transporter, LysE family
*
Burkholderia vietnamiensis G4

Site:
position = -103
score = 18.7632
sequence = CCTCCGTACCG-(13)-CAACTGTACCG-(0)-GTACTGTACAT-(8)-CGCTACACTGA

Gene: Bcep1808_3736: Transporter, LysE family
*
Burkholderia xenovorans LB400

Site:
position = -99
score = 17.264
sequence = CCCCCGTACCG-(13)-AAACCGTACAG-(0)-GTACTGTACCG-(8)-CGCTAGAATGC

Gene: Bxe_B0672: Transporter, LysE family
Transporter, LysE family
 
CRON 2.
BMA1950
*
Burkholderia mallei ATCC 23344

Site:
position = -27
score = 19.1386
sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTT

Gene: BMA1950: Riboflavin-specific deaminase
 
Burkholderia phymatum STM815
*
Burkholderia glumae BGR1

Site:
position = -323
score = 17.4069
sequence = GAACTGTACAG-(13)-CGATTGTACCG-(0)-TTACTGTTCCG-(8)-GATTACAGTTT

Gene: bglu_1g26840: Riboflavin-specific deaminase
*
Burkholderia cepacia AMMD

Site:
position = -206
score = 18.7895
sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG

Gene: Bamb_2385: Riboflavin-specific deaminase
*
Burkholderia pseudomallei K96243

Site:
position = -138
score = 19.1386
sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTT

Gene: BPSL1085: Riboflavin-specific deaminase
*
Burkholderia sp. 383

Site:
position = -218
score = 18.7895
sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG

Gene: Bcep18194_A5688: Riboflavin-specific deaminase
*
Burkholderia vietnamiensis G4

Site:
position = -181
score = 18.7895
sequence = CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTG

Gene: Bcep1808_2436: Riboflavin-specific deaminase
*
Burkholderia xenovorans LB400

Site:
position = -267
score = 17.9389
sequence = CAACTGTACCG-(13)-CGATTGTATCG-(0)-TTACTGTGCAG-(8)-CGCTACATTTG

Gene: Bxe_A3331: Riboflavin-specific deaminase
Riboflavin-specific deaminase
PF00892
 
Burkholderia mallei ATCC 23344

Gene: BMA1951: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia phymatum STM815

Gene: Bphy_2116: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia glumae BGR1

Gene: bglu_1g26850: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia cepacia AMMD

Gene: Bamb_2386: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia pseudomallei K96243

Gene: BPSL1084: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia sp. 383

Gene: Bcep18194_A5689: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2437: Permease of the drug/metabolite transporter (DMT) superfamily
 
Burkholderia xenovorans LB400
Permease of the drug/metabolite transporter (DMT) superfamily
aspB
 
Burkholderia mallei ATCC 23344

Gene: BMA1952: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia phymatum STM815

Gene: Bphy_2117: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia glumae BGR1

Gene: bglu_1g26860: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia cepacia AMMD

Gene: Bamb_2387: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia pseudomallei K96243

Gene: BPSL1083: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia sp. 383

Gene: Bcep18194_A5690: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2438: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_A3332: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
COG251 (TdcF)
 
Burkholderia mallei ATCC 23344

Gene: BMA2223: Endoribonuclease, L-PSP family
 
Burkholderia phymatum STM815

Gene: Bphy_2118: Endoribonuclease, L-PSP family
 
Burkholderia glumae BGR1

Gene: bglu_1g26870: Endoribonuclease, L-PSP family
 
Burkholderia cepacia AMMD

Gene: Bamb_2388: Endoribonuclease, L-PSP family
 
Burkholderia pseudomallei K96243

Gene: BPSL1082: Endoribonuclease, L-PSP family
 
Burkholderia sp. 383

Gene: Bcep18194_A5691: Endoribonuclease, L-PSP family
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2439: Endoribonuclease, L-PSP family
 
Burkholderia xenovorans LB400

Gene: Bxe_A3333: Endoribonuclease, L-PSP family
Endoribonuclease, L-PSP family
COG384 (PhzF)
 
Burkholderia mallei ATCC 23344

Gene: BMA2222: Phenazine biosynthesis protein PhzF like
 
Burkholderia phymatum STM815

Gene: Bphy_2119: Phenazine biosynthesis protein PhzF like
 
Burkholderia glumae BGR1
 
Burkholderia cepacia AMMD

Gene: Bamb_2389: Phenazine biosynthesis protein PhzF like
 
Burkholderia pseudomallei K96243

Gene: BPSL1081: Phenazine biosynthesis protein PhzF like
 
Burkholderia sp. 383

Gene: Bcep18194_A5692: Phenazine biosynthesis protein PhzF like
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2440: Phenazine biosynthesis protein PhzF like
 
Burkholderia xenovorans LB400

Gene: Bxe_A3334: Phenazine biosynthesis protein PhzF like
Phenazine biosynthesis protein PhzF like
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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