Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FixJ - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 6 2
Rhizobium leguminosarum bv. viciae 3841 11 6
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 4 2
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fixJf
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_PF00530: Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family
*2
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -33
score = 5.52881
sequence = TGTAACAATCCGTAACA

Gene: RL1881: Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family

Site:
position = -102
score = 5.67554
sequence = GGTAACAGTTTGTAACA

Gene: pRL90026: Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*2
Sinorhizobium meliloti 1021

Site:
position = -40
score = 5.60474
sequence = TGTAACAGAGTGTAACG

Gene: SMa1139: Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family

Gene: SMa1138: Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family
 
Xanthobacter autotrophicus Py2
Nitrogen fixation and oxygen response transcriptional regulator FixJf, LuxR family
 
CRON 2.
ccoN
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1537: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4523: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2763: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2792: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Brucella melitensis 16M

Gene: BMEI1564: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 2
Mesorhizobium loti MAFF303099

Gene: mlr6411: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)

Gene: mll6630: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*2
Rhizobium etli CFN 42

Gene: RHE_PF00507: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)

Site:
position = -152
score = 5.41029
sequence = TGCAACAGAGTGTAACA

Gene: RHE_PD00296: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
*2
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100205: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)

Site:
position = -142
score = 5.67554
sequence = TGTAACAGTTTGTAACC

Gene: pRL90018: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA0019: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 2
Sinorhizobium meliloti 1021

Gene: SMa0765: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)

Gene: SMa1220: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0459: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
ccoO
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1536: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4524: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2764: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2793: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Brucella melitensis 16M

Gene: BMEI1565: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 2
Mesorhizobium loti MAFF303099

Gene: mlr6412: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)

Gene: mll6629: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 2
Rhizobium etli CFN 42

Gene: RHE_PF00506: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)

Gene: RHE_PD00295: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 2
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100206: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)

Gene: pRL90017: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA0018: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 2
Sinorhizobium meliloti 1021

Gene: SMa0766: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)

Gene: SMa1216: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0460: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
ccoQ
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1535: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4525: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bsr2765: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 2
Mesorhizobium loti MAFF303099

Gene: msr6413: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)

Gene: msl6627: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 2
Rhizobium etli CFN 42

Gene: RHE_PF00505: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)

Gene: RHE_PD00294: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 2
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100206A: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)

Gene: pRL90016A: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA0017: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 2
Sinorhizobium meliloti 1021

Gene: SMa0767: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)

Gene: SMa1214: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0461: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
ccoP
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1534: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4526: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2766: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2794: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Brucella melitensis 16M

Gene: BMEI1566: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 2
Mesorhizobium loti MAFF303099

Gene: mlr6414: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)

Gene: mll6628: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 2
Rhizobium etli CFN 42

Gene: RHE_PF00504: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)

Gene: RHE_PD00293: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 2
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100207: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)

Gene: pRL90016: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Rhizobium sp. NGR234

Gene: NGR_c17970: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Rhodopseudomonas palustris CGA009

Gene: RPA0016: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 2
Sinorhizobium meliloti 1021

Gene: SMa0769: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)

Gene: SMa1213: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0462: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
 
CRON 3.
fixKf
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -102
score = 5.86007
sequence = TGTTACACACTGTTACA

Gene: RHE_PF00508: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
*3
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -106
score = 5.52881
sequence = TGTTACGGATTGTTACA

Gene: RL1880: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family

Site:
position = -72
score = 5.67554
sequence = GGTTACAAACTGTTACA

Gene: pRL90019: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family

Site:
position = -104
score = 5.67554
sequence = TGTTACAAACTGTTACC

Gene: pRL90025: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -105
score = 5.60474
sequence = CGTTACACTCTGTTACA

Gene: SMa1141: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
 
Xanthobacter autotrophicus Py2
Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
fixLf
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_PF00509: Two-component oxygen-sensor histidine kinase FixLf
 2
Rhizobium leguminosarum bv. viciae 3841

Gene: RL1879: Two-component oxygen-sensor histidine kinase FixLf

Gene: pRL90020: Two-component oxygen-sensor histidine kinase FixLf
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa1142: Two-component oxygen-sensor histidine kinase FixLf
 
Xanthobacter autotrophicus Py2
Two-component oxygen-sensor histidine kinase FixLf
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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