Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FixJ - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator
Biological process: Oxidative stress response
Effector: Oxygen
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571 3 2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 1 1
Bradyrhizobium sp. BTAi1 1 1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099 2 2
Mesorhizobium sp. BNC1 1 1
Nitrobacter winogradskyi Nb-255 1 1
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841 1 1
Rhizobium sp. NGR234 3 2
Rhodopseudomonas palustris CGA009 1 1
Sinorhizobium meliloti 1021 4 4
Xanthobacter autotrophicus Py2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SMc03253
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mlr6283: Predicted L-proline 3-hydroxylase
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -355
score = 4.95918
sequence = CTAGGTAGTTTCCCTTAG

Gene: SMc03253: Predicted L-proline 3-hydroxylase
 
Xanthobacter autotrophicus Py2
Predicted L-proline 3-hydroxylase
 
CRON 2.
nifA
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Azorhizobium caulinodans ORS 571

Site:
position = -114
score = 3.07455
sequence = CTCCGCGGTTTCCATTAT

Gene: AZC_1049: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2037: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Bradyrhizobium sp. BTAi1

Gene: BBta_5933: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Brucella melitensis 16M
*2
Mesorhizobium loti MAFF303099

Site:
position = -193
score = 3.10489
sequence = CTTCGGCGTTCTCTTCAA

Gene: mll5857: Nitrogen fixation transcriptional regulator NifA, Fis family

Gene: mll5837: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_PD00228: Nitrogen fixation transcriptional regulator NifA, Fis family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -70
score = 3.48233
sequence = CTTAGGAATATGCGTTAG

Gene: pRL100196: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Rhizobium sp. NGR234

Gene: NGR_a01260: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Rhodopseudomonas palustris CGA009

Gene: RPA4632: Nitrogen fixation transcriptional regulator NifA, Fis family
*
Sinorhizobium meliloti 1021

Site:
position = -154
score = 3.14249
sequence = TTACAAGAACCAACTTAC

Gene: SMa0815: Nitrogen fixation transcriptional regulator NifA, Fis family
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0082: Nitrogen fixation transcriptional regulator NifA, Fis family
Nitrogen fixation transcriptional regulator NifA, Fis family
AZC_1048
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1048: (FeS)4 cluster domain protein, co-localized with NifA
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
(FeS)4 cluster domain protein, co-localized with NifA
fixX
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -18
score = 3.42864
sequence = CTAAAGGGGAGCATTGAG

Gene: NGR_a01250: Ferredoxin-like protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Ferredoxin-like protein
 
CRON 3.
fixK
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Azorhizobium caulinodans ORS 571

Site:
position = -118
score = 3.97564
sequence = CTCCGTAAAATCACCTAC

Site:
position = -104
score = 4.60637
sequence = CTACGCAATACTACTTAA

Site:
position = -90
score = 3.72939
sequence = TTAAGGGCTGGGCCCTAA

Gene: AZC_4653: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
 
Bartonella quintana str. Toulouse
*4
Bradyrhizobium japonicum USDA 110

Gene: bll2109: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: bll3466: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: bll7696: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Site:
position = -93
score = 5.05223
sequence = CTACGGGGTTCTACGTAA

Site:
position = -79
score = 4.16308
sequence = GTAAGGCACCCCCCTTAA

Gene: bll2757: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*5
Bradyrhizobium sp. BTAi1

Gene: BBta_p0192: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: BBta_7770: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: BBta_7766: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: BBta_7767: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Site:
position = -102
score = 4.45272
sequence = CTACGTATATCTACGTAA

Site:
position = -88
score = 4.47452
sequence = GTAAGGGAACGTCCTTAA

Gene: BBta_2786: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
 
Brucella melitensis 16M
*
Mesorhizobium loti MAFF303099

Site:
position = -89
score = 4.86332
sequence = CTAGGTAGTTTCCCGTAG

Gene: mll6578: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*
Mesorhizobium sp. BNC1

Site:
position = -86
score = 5.15919
sequence = CTACGTAGTTTCCCTTAG

Gene: Meso_2220: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*
Nitrobacter winogradskyi Nb-255

Site:
position = -102
score = 4.59818
sequence = CTCCGTAAGACCCCTTAG

Site:
position = -88
score = 4.04155
sequence = TTAGGAGGCTGCCCTTAG

Gene: Nwi_1036: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -89
score = 4.51255
sequence = CTACGGGGAATCCCGCAA

Gene: NGR_b00800: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*
Rhodopseudomonas palustris CGA009

Site:
position = -105
score = 5.08636
sequence = CTACGTAGACCTACTTAG

Site:
position = -91
score = 4.73872
sequence = TTAGGGGAACCCACTTAA

Gene: RPA4250: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*3
Sinorhizobium meliloti 1021

Site:
position = -87
score = 4.78565
sequence = CTAAGTAGTTCCCTTTAG

Gene: SMa0762: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Gene: SMa0662: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family

Site:
position = -87
score = 5.18727
sequence = CTAAGTAATTTCCCTTAG

Gene: SMa1225: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
*
Xanthobacter autotrophicus Py2

Site:
position = -104
score = 4.58862
sequence = CTCCGTAAAACTACTTAA

Site:
position = -90
score = 4.4863
sequence = TTAAGGGCACCGACTTAA

Gene: Xaut_1746: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD