Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AcnR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Tricarboxylic acid cycle
Effector: Citrate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827 3 3
Saccharomonospora viridis DSM 43017 3 3
Saccharopolyspora erythraea NRRL 2338 2 2
Nakamurella multipartita DSM 44233 2 1
Frankia sp. EAN1pec
Frankia sp. CcI3
Acidothermus cellulolyticus 11B
Propionibacterium acnes KPA171202
Nocardioides sp. JS614
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
acnA
*
Actinosynnema mirum DSM 43827

Site:
position = -103
score = 5.76025
sequence = CAGGACACGCGTACTG

Gene: Amir_2132: Aconitate hydratase (EC 4.2.1.3)
*
Saccharomonospora viridis DSM 43017

Site:
position = -119
score = 4.58551
sequence = AAGGACAAGCGTACGG

Gene: Svir_22420: Aconitate hydratase (EC 4.2.1.3)
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -114
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: SACE_3811: Aconitate hydratase (EC 4.2.1.3)
*
Nakamurella multipartita DSM 44233

Site:
position = -158
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: Namu_2293: Aconitate hydratase (EC 4.2.1.3)
 
Frankia sp. EAN1pec

Gene: Franean1_2167: Aconitate hydratase (EC 4.2.1.3)
 
Frankia sp. CcI3

Gene: Francci3_1312: Aconitate hydratase (EC 4.2.1.3)
 
Acidothermus cellulolyticus 11B

Gene: Acel_1394: Aconitate hydratase (EC 4.2.1.3)
 
Propionibacterium acnes KPA171202

Gene: PPA1061: Aconitate hydratase (EC 4.2.1.3)
 
Nocardioides sp. JS614

Gene: Noca_2876: Aconitate hydratase (EC 4.2.1.3)
Aconitate hydratase (EC 4.2.1.3)
acnR
*
Actinosynnema mirum DSM 43827

Site:
position = -53
score = 4.06725
sequence = CAATCCGTACGTACTG

Gene: Amir_2120: Aconitase gene transcriptional regulator AcnR, TetR family
*
Saccharomonospora viridis DSM 43017

Site:
position = -52
score = 4.69135
sequence = CAGTACGTACGTACGG

Gene: Svir_22500: Aconitase gene transcriptional regulator AcnR, TetR family
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_3827: Aconitase gene transcriptional regulator AcnR, TetR family
 
Nakamurella multipartita DSM 44233

Gene: Namu_2292: Aconitase gene transcriptional regulator AcnR, TetR family
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Aconitase gene transcriptional regulator AcnR, TetR family
 
CRON 2.
icd
*
Actinosynnema mirum DSM 43827

Site:
position = -48
score = 5.78986
sequence = CAGTACGCTTGTCCTG

Gene: Amir_6478: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
*
Saccharomonospora viridis DSM 43017

Site:
position = -75
score = 5.42278
sequence = CAGTACGCTTGTACCG

Gene: Svir_05050: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -48
score = 5.42278
sequence = CAGTACGCTTGTACCG

Gene: SACE_6636: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Nakamurella multipartita DSM 44233

Gene: Namu_1281: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B

Gene: Acel_0388: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD