Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GguR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP 2 2
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48 8 4
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp 17 5
Pseudomonas putida KT2440 15 5
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 12 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gudD2
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -450
score = 4.71593
sequence = ACGTTATCGTACAACAA

Site:
position = -251
score = 5.08919
sequence = AGGTCATACGACAACAT

Gene: Pmen_1214: Glucarate dehydratase (EC 4.2.1.40)
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Glucarate dehydratase (EC 4.2.1.40)
tctC
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1213: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
tctB
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1212: Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
tctA
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1211: Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates
 
CRON 2.
exuT
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -385
score = 4.2377
sequence = CAGTCATCGTATAACGA

Site:
position = -265
score = 5.55264
sequence = ATGTTGTACGACAACAT

Gene: PSPTO5219: Hexuronate transporter
Hexuronate transporter
 
CRON 3.
kdgD
*
Azotobacter vinelandii AvOP

Site:
position = -72
score = 4.92493
sequence = AAGTCATACGATAACGT

Gene: Avin_05220: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -71
score = 5.47998
sequence = ATGTTGTACGATAACTT

Gene: PSEEN2658: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -275
score = 5.08919
sequence = ATGTTGTCGTATGACCT

Site:
position = -76
score = 4.71593
sequence = TTGTTGTACGATAACGT

Gene: Pmen_1215: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Pseudomonas putida KT2440

Site:
position = -71
score = 5.28576
sequence = AGGTTGTACGATAACTT

Gene: PP3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -77
score = 5.0964
sequence = CAGTTGTACGATGACTT

Gene: PSPTO4549: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudD
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN0731: Glucarate dehydratase (EC 4.2.1.40)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1216: Glucarate dehydratase (EC 4.2.1.40)
 
Pseudomonas putida KT2440

Gene: PP4757: Glucarate dehydratase (EC 4.2.1.40)
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3285: Glucarate dehydratase (EC 4.2.1.40)
Glucarate dehydratase (EC 4.2.1.40)
garP
 
Azotobacter vinelandii AvOP

Gene: Avin_05240: D-galactarate permease
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN2657: D-galactarate permease
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1217: D-galactarate permease
 
Pseudomonas putida KT2440

Gene: PP3600: D-galactarate permease
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4548: D-galactarate permease
D-galactarate permease
garD
 
Azotobacter vinelandii AvOP

Gene: Avin_05250: D-galactarate dehydratase (EC 4.2.1.42)
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN2656: D-galactarate dehydratase (EC 4.2.1.42)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1218: D-galactarate dehydratase (EC 4.2.1.42)
 
Pseudomonas putida KT2440

Gene: PP3601: D-galactarate dehydratase (EC 4.2.1.42)
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4547: D-galactarate dehydratase (EC 4.2.1.42)
D-galactarate dehydratase (EC 4.2.1.42)
serA
 
Azotobacter vinelandii AvOP

Gene: Avin_05260: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1219: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
kgsD
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN2655: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP3602: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -163
score = 5.0964
sequence = AAGTTGTACGATGACTG

Gene: PSPTO3323: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
gguT
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -105
score = 5.28385
sequence = GTGTTGTCGTACAACTT

Gene: PSEEN0730: Predicted hexarate transporter
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -79
score = 5.14016
sequence = ATCTTGTCGTACAACTT

Gene: PP4758: Predicted hexarate transporter
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3284: Predicted hexarate transporter
Predicted hexarate transporter
 
CRON 4.
udh
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -316
score = 4.75711
sequence = ACGTTGTCATACAACTT

Site:
position = -60
score = 5.01958
sequence = AAGTCATACGACAACGT

Gene: Pmen_3299: Uronate dehydrogenase (EC 1.1.1.203)
*
Pseudomonas putida KT2440

Site:
position = -43
score = 5.11119
sequence = AAGTCATACGACAACCT

Gene: PP1171: Uronate dehydrogenase (EC 1.1.1.203)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -48
score = 5.07441
sequence = AAGTCATACGACAACAG

Gene: PSPTO1053: Uronate dehydrogenase (EC 1.1.1.203)
Uronate dehydrogenase (EC 1.1.1.203)
uxuL
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_3300: Predicted glucuronolactone/galactarolactone lactonase
 
Pseudomonas putida KT2440

Gene: PP1170: Predicted glucuronolactone/galactarolactone lactonase
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1052: Predicted glucuronolactone/galactarolactone lactonase
Predicted glucuronolactone/galactarolactone lactonase
uxuP
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_3301: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Pseudomonas putida KT2440

Gene: PP1169: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1051: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_3302: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Pseudomonas putida KT2440

Gene: PP_1168: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1050: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_3303: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Pseudomonas putida KT2440

Gene: PP1167: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1049: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
PF00892
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_3304: Drug/metabolite transporter
 
Pseudomonas putida KT2440

Gene: PP1166: Drug/metabolite transporter
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1048: Drug/metabolite transporter
Drug/metabolite transporter
aldE
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -54
score = 4.78363
sequence = CAGTTGTACGATGACAC

Gene: Pmen_3306: Aldose 1-epimerase (EC 5.1.3.3)
 
Pseudomonas putida KT2440

Gene: PP1165: Aldose 1-epimerase (EC 5.1.3.3)
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1047: Aldose 1-epimerase (EC 5.1.3.3)
Aldose 1-epimerase (EC 5.1.3.3)
 
CRON 5.
gguR
*2
Azotobacter vinelandii AvOP

Gene: Avin_32950: Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Site:
position = -213
score = 4.50449
sequence = ATGTCATCATATGACTT

Site:
position = -63
score = 4.53025
sequence = CTATTGTCGTACGACTT

Gene: Avin_05190: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
 
Pseudomonas aeruginosa PAO1
*2
Pseudomonas entomophila L48

Site:
position = -63
score = 4.78613
sequence = ATGTGATCGTACAACTG

Gene: PSEEN2654: Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Site:
position = -201
score = 5.28385
sequence = AAGTTGTACGACAACAC

Gene: PSEEN0729: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -63
score = 4.78363
sequence = GTGTCATCGTACAACTG

Gene: Pmen_3305: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*2
Pseudomonas putida KT2440

Site:
position = -47
score = 4.56991
sequence = ATGTGATCGTACAACCG

Gene: PP3603: Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Site:
position = -104
score = 5.14016
sequence = AAGTTGTACGACAAGAT

Gene: PP4759: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3283: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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