Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Zur - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827 18 7
Saccharopolyspora erythraea NRRL 2338 10 3
Saccharomonospora viridis DSM 43017 3 1
Nakamurella multipartita DSM 44233 5 3
Frankia sp. EAN1pec 5 2
Frankia sp. CcI3
Acidothermus cellulolyticus 11B
Propionibacterium acnes KPA171202 13 4
Nocardioides sp. JS614 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpmB2
*
Actinosynnema mirum DSM 43827

Site:
position = -39
score = 5.25293
sequence = GGTGAAAATGATTGTCATT

Gene: Amir_0607: LSU ribosomal protein L28p
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -34
score = 5.64265
sequence = AATGAAAACGGATGTCGTT

Site:
position = -88
score = 4.8512
sequence = GTCGGCAACGGTTTTCATT

Gene: SACE_0754: LSU ribosomal protein L28p
 
Saccharomonospora viridis DSM 43017
*
Nakamurella multipartita DSM 44233

Site:
position = -126
score = 4.91838
sequence = AACGAGACCGATTCTCAGT

Gene: Namu_3856: LSU ribosomal protein L28p
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
*
Propionibacterium acnes KPA171202

Site:
position = -43
score = 5.13255
sequence = TATGATAATGATTCTCATA

Gene: PPA2158: LSU ribosomal protein L28p
 
Nocardioides sp. JS614
LSU ribosomal protein L28p
rpmG2
 
Actinosynnema mirum DSM 43827

Gene: Amir_0606: LSU ribosomal protein L33p
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0753: LSU ribosomal protein L33p
 
Saccharomonospora viridis DSM 43017
*
Nakamurella multipartita DSM 44233

Site:
position = -43
score = 4.91643
sequence = ACTGAGAATCGGTCTCGTT

Gene: Namu_3855: LSU ribosomal protein L33p
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA2160: LSU ribosomal protein L33p
 
Nocardioides sp. JS614
LSU ribosomal protein L33p
rpsN2
 
Actinosynnema mirum DSM 43827

Gene: Amir_0605: SSU ribosomal protein S14p
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0752: SSU ribosomal protein S14p
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA2161: SSU ribosomal protein S14p
 
Nocardioides sp. JS614
SSU ribosomal protein S14p
rpsR2
 
Actinosynnema mirum DSM 43827

Gene: Amir_0604: SSU ribosomal protein S18p
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0751: SSU ribosomal protein S18p
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
SSU ribosomal protein S18p
rpmF2
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA2162: LSU ribosomal protein L32p
 
Nocardioides sp. JS614
LSU ribosomal protein L32p
 
CRON 2.
znuA2
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233

Gene: Namu_1071: Zinc ABC transporter, periplasmic-binding protein ZnuA
*
Frankia sp. EAN1pec

Site:
position = -25
score = 5.83885
sequence = ATCGACAACCGTTTTCATT

Gene: Franean1_7253: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Zinc ABC transporter, periplasmic-binding protein ZnuA
Franean1_7254
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec

Gene: Franean1_7254: ABC-type uncharacterized transport system, duplicated ATPase component
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
ABC-type uncharacterized transport system, duplicated ATPase component
Franean1_7255
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec

Gene: Franean1_7255: ABC-type Mn2+/Zn2+ transport systems, permease components
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
ABC-type Mn2+/Zn2+ transport systems, permease components
Franean1_7256
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec

Gene: Franean1_7256: ABC-type Mn2+/Zn2+ transport systems, permease components
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
ABC-type Mn2+/Zn2+ transport systems, permease components
Namu_1072
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
*
Nakamurella multipartita DSM 44233

Site:
position = -27
score = 5.48021
sequence = AACGAGAACCGTTCTCAGT

Gene: Namu_1072: Quinoprotein amine dehydrogenase, beta chain-like
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Quinoprotein amine dehydrogenase, beta chain-like
Namu_1070
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233

Gene: Namu_1070: Quinoprotein amine dehydrogenase, beta chain-like
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Quinoprotein amine dehydrogenase, beta chain-like
 
CRON 3.
TIGR03773
*
Actinosynnema mirum DSM 43827

Site:
position = -60
score = 5.50103
sequence = ATTGAAAATGATTGTCCTT

Gene: Amir_4776: Conserved hypothetical protein CHP03773, ABC transporter-like
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
*
Propionibacterium acnes KPA171202

Site:
position = -48
score = 5.73345
sequence = ATCGATAACCGTTCTCATT

Gene: PPA1500: Conserved hypothetical protein CHP03773, ABC transporter-like
 
Nocardioides sp. JS614
Conserved hypothetical protein CHP03773, ABC transporter-like
znuA3
*
Actinosynnema mirum DSM 43827

Site:
position = -78
score = 5.90179
sequence = ATTGAAAACGGTTGTCGTT

Gene: Amir_4768: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA1501: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Nocardioides sp. JS614
Zinc ABC transporter, periplasmic-binding protein ZnuA
PPA1502
 
Actinosynnema mirum DSM 43827
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA1502: Surface-anchored repeat, actinobacteria
 
Nocardioides sp. JS614
Surface-anchored repeat, actinobacteria
znuC3
 
Actinosynnema mirum DSM 43827

Gene: Amir_4770: Zinc ABC transporter, ATP-binding protein ZnuC
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA1503: Zinc ABC transporter, ATP-binding protein ZnuC
 
Nocardioides sp. JS614
Zinc ABC transporter, ATP-binding protein ZnuC
znuB3
 
Actinosynnema mirum DSM 43827

Gene: Amir_4771: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202

Gene: PPA1504: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Nocardioides sp. JS614
Zinc ABC transporter, inner membrane permease protein ZnuB
Amir_4769
 
Actinosynnema mirum DSM 43827

Gene: Amir_4769: hypothetical protein
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
hypothetical protein
 
CRON 4.
Amir_3101
*
Actinosynnema mirum DSM 43827

Site:
position = -65
score = 5.71153
sequence = GTTGAAAACCGTTGTCATT

Gene: Amir_3101: Surface-anchored repeat, actinobacteria
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Surface-anchored repeat, actinobacteria
Amir_3100
 
Actinosynnema mirum DSM 43827

Gene: Amir_3100: Surface-anchored repeat, actinobacteria
 
Saccharopolyspora erythraea NRRL 2338
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Surface-anchored repeat, actinobacteria
 
CRON 5.
znuA
*
Actinosynnema mirum DSM 43827

Site:
position = -49
score = 5.19824
sequence = CTCGACAACGGTTACCATT

Gene: Amir_0352: Zinc ABC transporter, periplasmic-binding protein ZnuA
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -68
score = 5.24099
sequence = CATGACAACGGTTTCCGTT

Gene: SACE_0453: Zinc ABC transporter, periplasmic-binding protein ZnuA
*
Saccharomonospora viridis DSM 43017

Site:
position = -89
score = 5.20491
sequence = ATCGAAAATCATTTCCAAT

Gene: Svir_35300: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Nakamurella multipartita DSM 44233

Gene: Namu_4923: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2479: Zinc ABC transporter, periplasmic-binding protein ZnuA
 
Acidothermus cellulolyticus 11B

Gene: Acel_2086: Zinc ABC transporter, periplasmic-binding protein ZnuA
*
Propionibacterium acnes KPA171202

Site:
position = -45
score = 5.13725
sequence = TACGACAATGGTTATCACT

Gene: PPA0617: Zinc ABC transporter, periplasmic-binding protein ZnuA
*
Nocardioides sp. JS614

Site:
position = -29
score = 5.31096
sequence = TTTGACAATCATTCTCAAT

Site:
position = -7
score = 4.45756
sequence = GCTGAGAATGATTCTCATG

Gene: Noca_1937: Zinc ABC transporter, periplasmic-binding protein ZnuA
Zinc ABC transporter, periplasmic-binding protein ZnuA
znuC
 
Actinosynnema mirum DSM 43827

Gene: Amir_0353: Zinc ABC transporter, ATP-binding protein ZnuC
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0452: Zinc ABC transporter, ATP-binding protein ZnuC
 
Saccharomonospora viridis DSM 43017

Gene: Svir_35290: Zinc ABC transporter, ATP-binding protein ZnuC
 
Nakamurella multipartita DSM 44233

Gene: Namu_4922: Zinc ABC transporter, ATP-binding protein ZnuC
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2478: Zinc ABC transporter, ATP-binding protein ZnuC
 
Acidothermus cellulolyticus 11B

Gene: Acel_2087: Zinc ABC transporter, ATP-binding protein ZnuC
 
Propionibacterium acnes KPA171202

Gene: PPA0616: Zinc ABC transporter, ATP-binding protein ZnuC
 
Nocardioides sp. JS614

Gene: Noca_1936: Zinc ABC transporter, ATP-binding protein ZnuC
Zinc ABC transporter, ATP-binding protein ZnuC
znuB
 
Actinosynnema mirum DSM 43827

Gene: Amir_0354: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0451: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Saccharomonospora viridis DSM 43017

Gene: Svir_35280: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Nakamurella multipartita DSM 44233

Gene: Namu_4921: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Frankia sp. EAN1pec
 2
Frankia sp. CcI3

Gene: Francci3_2477: Zinc ABC transporter, inner membrane permease protein ZnuB

Gene: Francci3_2476: Zinc ABC transporter, inner membrane permease protein ZnuB
 2
Acidothermus cellulolyticus 11B

Gene: Acel_2088: Zinc ABC transporter, inner membrane permease protein ZnuB

Gene: Acel_2089: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Propionibacterium acnes KPA171202

Gene: PPA0615: Zinc ABC transporter, inner membrane permease protein ZnuB
 
Nocardioides sp. JS614

Gene: Noca_1935: Zinc ABC transporter, inner membrane permease protein ZnuB
Zinc ABC transporter, inner membrane permease protein ZnuB
zur
*2
Actinosynnema mirum DSM 43827

Gene: Amir_1261: Zinc homeostasis transcriptional regulator Zur, Fur family

Site:
position = -55
score = 5.54674
sequence = ATTGAAAACGATTGTCTTT

Gene: Amir_4413: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1498: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Saccharomonospora viridis DSM 43017

Gene: Svir_13670: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Nakamurella multipartita DSM 44233

Gene: Namu_0066: Zinc homeostasis transcriptional regulator Zur, Fur family
*
Frankia sp. EAN1pec

Site:
position = -134
score = 5.12123
sequence = AATGAAAACCGATGTCAAC

Gene: Franean1_7263: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Frankia sp. CcI3

Gene: Francci3_0061: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Acidothermus cellulolyticus 11B

Gene: Acel_2085: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Propionibacterium acnes KPA171202

Gene: PPA0948: Zinc homeostasis transcriptional regulator Zur, Fur family
 
Nocardioides sp. JS614

Gene: Noca_1934: Zinc homeostasis transcriptional regulator Zur, Fur family
Zinc homeostasis transcriptional regulator Zur, Fur family
 
CRON 6.
yciC
*
Actinosynnema mirum DSM 43827

Site:
position = -52
score = 5.53543
sequence = AATGACAATCGTTTCCGTT

Gene: Amir_4416: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -65
score = 5.41889
sequence = AACGACATCCGTTTTCATT

Site:
position = -11
score = 5.04579
sequence = AATGAAAACCGTTGCCGAC

Gene: SACE_0755: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
rpmE2
 
Actinosynnema mirum DSM 43827

Gene: Amir_4415: LSU ribosomal protein L31p
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0756: LSU ribosomal protein L31p
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
*
Propionibacterium acnes KPA171202

Site:
position = -72
score = 5.12638
sequence = TATGAGAATCATTATCATA

Gene: PPA2157: LSU ribosomal protein L31p
 
Nocardioides sp. JS614
LSU ribosomal protein L31p
rpmF2
 
Actinosynnema mirum DSM 43827

Gene: Amir_4414: LSU ribosomal protein L32p
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_0757: LSU ribosomal protein L32p
 
Saccharomonospora viridis DSM 43017
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Propionibacterium acnes KPA171202
 
Nocardioides sp. JS614
LSU ribosomal protein L32p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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