Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HcpR - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824 8 6
Clostridium butyricum 5521 1 1
Clostridium beijerincki NCIMB 8052 5 4
Clostridium botulinum A str. ATCC 3502 6 5
Clostridium kluyveri DSM 555 3 3
Clostridium novyi NT 3 3
Clostridium perfringens ATCC 13124 3 2
Clostridium tetani E88 9 7
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Cbei_4355
*
Clostridium acetobutylicum ATCC 824

Site:
position = -83
score = 5.91415
sequence = TAGTAACATAAGTTACAG

Gene: CAC0362: Conserved protein
 
Clostridium butyricum 5521
*
Clostridium beijerincki NCIMB 8052

Site:
position = -82
score = 5.84437
sequence = TTGTAACTTTTGTTACAT

Gene: Cbei_4355: Conserved protein
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -73
score = 5.37611
sequence = TCGTAACATACGTTACTT

Gene: CTC02534: Conserved protein
Conserved protein
 
CRON 2.
hcpR
*
Clostridium acetobutylicum ATCC 824

Site:
position = -40
score = 5.91881
sequence = CAGTAACATATGTTACAC

Gene: CAC0884: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Clostridium butyricum 5521

Gene: CBY_3934: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0780: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -45
score = 5.9164
sequence = CTGTAACTAATGTTACCA

Gene: CBO2923: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
*
Clostridium kluyveri DSM 555

Site:
position = -67
score = 5.48446
sequence = CTGTAACTTACGTTACAC

Gene: CKL_2420: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
*
Clostridium novyi NT

Site:
position = -63
score = 5.51741
sequence = ATGTAACCTAAGTTACCA

Gene: NT01CX_0590: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Clostridium perfringens ATCC 13124

Gene: CPF_2845: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
*2
Clostridium tetani E88

Site:
position = -20
score = 5.4024
sequence = CAGTAACCATAGTTACTA

Gene: CTC00896: Nitric oxide-resposive transcriptional regulator HcpR, Crp family

Gene: CTC01969: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
CRON 3.
CTC00897
 
Clostridium acetobutylicum ATCC 824
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -98
score = 5.4024
sequence = TAGTAACTATGGTTACTG

Gene: CTC00897: conserved protein, permease-related
conserved protein, permease-related
CTC00898
 
Clostridium acetobutylicum ATCC 824
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC00898: 4Fe-4S binding domain
4Fe-4S binding domain
 
CRON 4.
Cbei_3757
 
Clostridium acetobutylicum ATCC 824
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_3757: hypothetical protein
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -110
score = 5.72255
sequence = TAGTAACATTAGTTACTG

Gene: CBO2926: hypothetical protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -108
score = 5.91415
sequence = TAGTAACATAAGTTACAG

Gene: CTC00439: conserved protein
hypothetical protein
 
CRON 5.
hcp
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -107
score = 5.80495
sequence = TAGTAACCAATGTTACAG

Gene: CA_C3428: Hydroxylamine reductase (EC 1.7.-.-)

Site:
position = -88
score = 5.77642
sequence = AAGTAACAATTGTTACGG

Gene: CA_C2750: Hydroxylamine reductase (EC 1.7.-.-)
 
Clostridium butyricum 5521
*2
Clostridium beijerincki NCIMB 8052

Site:
position = -126
score = 5.21415
sequence = TAGTAACGTGTGTTACAG

Gene: Cbei_2276: Hydroxylamine reductase (EC 1.7.-.-)

Site:
position = -223
score = 5.48946
sequence = GCGTAACCATTGTTACAG

Site:
position = -128
score = 5.75574
sequence = TAGTAACGTATGTTACAG

Gene: Cbei_1434: Hydroxylamine reductase (EC 1.7.-.-)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -122
score = 5.99654
sequence = TTGTAACATAGGTTACAG

Gene: CBO2792: Hydroxylamine reductase (EC 1.7.-.-)
*
Clostridium kluyveri DSM 555

Site:
position = -100
score = 4.82942
sequence = TCGTATCCTAAGTTACCG

Gene: CKL_0935: Hydroxylamine reductase (EC 1.7.-.-)
*
Clostridium novyi NT

Site:
position = -100
score = 5.79192
sequence = TGGTAACATAAGTTACAT

Gene: NT01CX_0591: Hydroxylamine reductase (EC 1.7.-.-)
*
Clostridium perfringens ATCC 13124

Site:
position = -141
score = 5.55949
sequence = AGGTAACTTTAGTTACCG

Gene: CPF_2909: Hydroxylamine reductase (EC 1.7.-.-)
*
Clostridium tetani E88

Site:
position = -106
score = 6.12734
sequence = TTGTAACATTTGTTACCG

Gene: CTC00410: Hydroxylamine reductase (EC 1.7.-.-)
Hydroxylamine reductase (EC 1.7.-.-)
 
CRON 6.
frdX
*
Clostridium acetobutylicum ATCC 824

Site:
position = -101
score = 5.91881
sequence = GTGTAACATATGTTACTG

Gene: CAC0885: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -77
score = 5.9164
sequence = TGGTAACATTAGTTACAG

Gene: CBO2922: 4Fe-4S ferredoxin iron-sulfur binding domain protein
*
Clostridium kluyveri DSM 555

Site:
position = -74
score = 5.48446
sequence = GTGTAACGTAAGTTACAG

Gene: CKL_2419: 4Fe-4S ferredoxin iron-sulfur binding domain protein
*
Clostridium novyi NT

Site:
position = -89
score = 5.51741
sequence = TGGTAACTTAGGTTACAT

Gene: NT01CX_0589: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -93
score = 5.59866
sequence = ACGTAACATTCGTTACAG

Gene: CTC01972: 4Fe-4S ferredoxin iron-sulfur binding domain protein
4Fe-4S ferredoxin iron-sulfur binding domain protein
 
CRON 7.
CAC0758
*
Clostridium acetobutylicum ATCC 824

Site:
position = -133
score = 4.62538
sequence = TCGTAACGAAGGATACCG

Gene: CAC0758: no significant homology
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
no significant homology
CAC0759
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0759: Conserved protein
*
Clostridium butyricum 5521

Site:
position = -98
score = 6.18233
sequence = CTGTAACTTATGTTACAG

Gene: CBY_3927: Conserved protein
*
Clostridium beijerincki NCIMB 8052

Site:
position = -178
score = 5.24286
sequence = TTGTATCATATGTTACGT

Gene: Cbei_1845: Conserved protein
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -143
score = 5.00786
sequence = GAGTAACATCCGTTACAG

Gene: CBO1658: Conserved protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -75
score = 5.85058
sequence = AGGTAACCTATGTTACAG

Gene: CPF_1730: Conserved protein
*
Clostridium tetani E88

Site:
position = -79
score = 5.74629
sequence = TGGTAACTAATGTTACAT

Gene: CTC01608: Conserved protein
Conserved protein
CAC2488
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0760: Conserved protein
 
Clostridium butyricum 5521
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1846: Conserved protein
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1659: Conserved protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1729: Conserved protein
 
Clostridium tetani E88

Gene: CTC01607: Conserved protein
Conserved protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD