Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HcpR - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795
Clostridium difficile 630 3 2
Clostridium hiranonis DSM 13275
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
frdX
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -113
score = 6.06689
sequence = GGGGATATAAAAATCCTA

Gene: CD2169: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Clostridium hiranonis DSM 13275
4Fe-4S ferredoxin iron-sulfur binding domain protein
hcp
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02437: Hydroxylamine reductase (EC 1.7.-.-)
 
Clostridium difficile 630

Gene: CD2168: Hydroxylamine reductase (EC 1.7.-.-)
 
Clostridium hiranonis DSM 13275
Hydroxylamine reductase (EC 1.7.-.-)
 
CRON 2.
hcpR
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -45
score = 6.06689
sequence = TAGGATTTTTATATCCCC

Gene: CD2170: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Clostridium hiranonis DSM 13275
Nitric oxide-resposive transcriptional regulator HcpR, Crp family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD