Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Fur - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium difficile 630 16 9
Clostridium bartlettii DSM 16795 12 5
Clostridium hiranonis DSM 13275 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
zupT
*
Clostridium difficile 630

Site:
position = -38
score = 6.27902
sequence = AATGATAATCAATATCAAT

Gene: CD1087: Metal transporter, ZIP family
 
Clostridium bartlettii DSM 16795
*
Clostridium hiranonis DSM 13275

Site:
position = -53
score = 5.3352
sequence = ATTAATATTCACTTTCATT

Gene: CLOHIR_01757: Metal transporter, ZIP family
Metal transporter, ZIP family
 
CRON 2.
PF10087
*
Clostridium difficile 630

Site:
position = -37
score = 5.82234
sequence = AATGAAAATCAATATCAAA

Site:
position = -43
score = 5.61093
sequence = AATAATAATGAAAATCAAT

Site:
position = -106
score = 6.0324
sequence = AATGATAATTAATATCAAT

Gene: CD2499: Uncharacterized protein conserved in bacteria (DUF2325)
*
Clostridium bartlettii DSM 16795

Site:
position = -163
score = 5.35407
sequence = ACTGATAAATATTATCAAT

Site:
position = -103
score = 6.03211
sequence = AATGATAATCAGTATCATT

Gene: CLOBAR_01156: Uncharacterized protein conserved in bacteria (DUF2325)
*
Clostridium hiranonis DSM 13275

Site:
position = -71
score = 5.48628
sequence = CATAATAATGATTATCAAA

Gene: CLOHIR_00610: Uncharacterized protein conserved in bacteria (DUF2325)
Uncharacterized protein conserved in bacteria (DUF2325)
 
CRON 3.
fur
*
Clostridium difficile 630

Site:
position = -41
score = 5.33967
sequence = TTTAATAAAGATTATCAAT

Gene: CD1287: Transcriptional regulator for iron transport and metabolism, Fur family
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02180: Transcriptional regulator for iron transport and metabolism, Fur family
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01204: Transcriptional regulator for iron transport and metabolism, Fur family
Transcriptional regulator for iron transport and metabolism, Fur family
 
CRON 4.
CD1485
*
Clostridium difficile 630

Site:
position = -37
score = 5.43028
sequence = CTTGATATTAATTTTCATT

Site:
position = -74
score = 6.27902
sequence = ATTGATATTGATTATCATT

Gene: CD1485: Conserved protein
*
Clostridium bartlettii DSM 16795

Site:
position = -35
score = 5.18968
sequence = GGTGATAATAATTATCAAT

Site:
position = -67
score = 5.44971
sequence = AATTATTATCATTATCAAT

Gene: CLOBAR_01994: Conserved protein
 
Clostridium hiranonis DSM 13275
Conserved protein
 
CRON 5.
fhuD
*
Clostridium difficile 630

Site:
position = -50
score = 5.82006
sequence = TATGATAATCAATATCATA

Gene: CD2878: Ferrichrome-binding protein
*
Clostridium bartlettii DSM 16795

Site:
position = -41
score = 6.09069
sequence = ATTGATAATCATTATTAAT

Gene: CLOBAR_00861: Ferrichrome-binding protein
 
Clostridium hiranonis DSM 13275
Ferrichrome-binding protein
fhuB
 
Clostridium difficile 630

Gene: CD2877: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00860: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
 
Clostridium hiranonis DSM 13275
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
fhuG
 
Clostridium difficile 630

Gene: CD2876: Ferrichrome ABC transporter permease
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00859: Ferrichrome ABC transporter permease
 
Clostridium hiranonis DSM 13275
Ferrichrome ABC transporter permease
fhuC
 
Clostridium difficile 630

Gene: CD2875: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00858: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
 
Clostridium hiranonis DSM 13275
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
 
CRON 6.
CD1647
*
Clostridium difficile 630

Site:
position = -91
score = 5.30012
sequence = ATTGACAATGATAATTATT

Site:
position = -85
score = 5.26344
sequence = AATGATAATTATTATTGAT

Site:
position = -50
score = 6.02653
sequence = AATGATAATAATTTTCATT

Gene: CD1647: Iron compound ABC uptake transporter permease protein
*
Clostridium bartlettii DSM 16795

Site:
position = -115
score = 5.58085
sequence = AATGATAATCGTTATCATG

Gene: CLOBAR_00960: Iron compound ABC uptake transporter permease protein
 
Clostridium hiranonis DSM 13275
Iron compound ABC uptake transporter permease protein
CD1648
 
Clostridium difficile 630

Gene: CD1648: Iron compound ABC uptake transporter permease protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00959: Iron compound ABC uptake transporter permease protein
 
Clostridium hiranonis DSM 13275
Iron compound ABC uptake transporter permease protein
CD1649
 
Clostridium difficile 630

Gene: CD1649: Iron compound ABC uptake transporter ATP-binding protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00958: Iron compound ABC uptake transporter ATP-binding protein
 
Clostridium hiranonis DSM 13275
Iron compound ABC uptake transporter ATP-binding protein
CD1650
 
Clostridium difficile 630

Gene: CD1650: Iron compound ABC uptake transporter substrate-binding protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00957: Iron compound ABC uptake transporter substrate-binding protein
 
Clostridium hiranonis DSM 13275
Iron compound ABC uptake transporter substrate-binding protein
 
CRON 7.
PF11449
*
Clostridium difficile 630

Site:
position = -71
score = 6.23294
sequence = ATTGATATTGATTATCAAT

Gene: CD1819: Predicted manganese transporter, 11 TMS
 
Clostridium bartlettii DSM 16795
 
Clostridium hiranonis DSM 13275
Predicted manganese transporter, 11 TMS
 
CRON 8.
feoA
*2
Clostridium difficile 630

Site:
position = -33
score = 5.97455
sequence = TTTGATAATGATTTTCATT

Gene: CD1745A: Ferrous iron transport protein A

Site:
position = -33
score = 5.71828
sequence = AGTGATAATGAATTTCATT

Gene: CD3273: Ferrous iron transport protein A
*
Clostridium bartlettii DSM 16795

Site:
position = -30
score = 5.66426
sequence = TATGAAAATGAATTTCATT

Gene: CLOBAR_00324: Ferrous iron transport protein A
*
Clostridium hiranonis DSM 13275

Site:
position = -39
score = 6.07486
sequence = ATTGATAATGAATTTCATT

Gene: CLOHIR_00731: Ferrous iron transport protein A
Ferrous iron transport protein A
feoB
 
Clostridium difficile 630

Gene: CD3274: Ferrous iron transport protein B
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00323: Ferrous iron transport protein B
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00730: Ferrous iron transport protein B
Ferrous iron transport protein B
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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