Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HcpR - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfuromonas acetoxidans DSM 684 1 1
Geobacter lovleyi SZ 7 5
Geobacter metallireducens GS-15 10 7
Geobacter sp. FRC-32 7 4
Geobacter sp. M21 9 6
Geobacter sulfurreducens PCA 12 7
Geobacter uraniumreducens Rf4 10 7
Pelobacter carbinolicus str. DSM 2380 1 1
Pelobacter propionicus DSM 2379 6 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SSF140683
 
Desulfuromonas acetoxidans DSM 684
*2
Geobacter lovleyi SZ

Site:
position = -120
score = 4.54334
sequence = GCATGACGTATGTCAATT

Site:
position = -74
score = 4.6116
sequence = TATTGATTCAGATCAAAC

Gene: Glov_0219: SP0561-like superfamily hypothetical protein

Site:
position = -187
score = 4.6751
sequence = GCATGACTGCGGTCAAAA

Gene: Glov_2648: SP0561-like superfamily hypothetical protein
*
Geobacter metallireducens GS-15

Site:
position = -73
score = 4.63141
sequence = TTTTGATTCACATCATAA

Gene: Gmet_2513: SP0561-like superfamily hypothetical protein
*
Geobacter sp. FRC-32

Site:
position = -73
score = 5.4493
sequence = TTTTGACCCAGGTCATAA

Gene: Geob_0943: SP0561-like superfamily hypothetical protein
*
Geobacter sp. M21

Site:
position = -76
score = 5.13754
sequence = TTTTGACCCATGTCATAA

Gene: GM21_1234: SP0561-like superfamily hypothetical protein
*
Geobacter sulfurreducens PCA

Site:
position = -77
score = 5.04445
sequence = TCTTGACCCACATCATAA

Gene: GSU2659: SP0561-like superfamily hypothetical protein
*
Geobacter uraniumreducens Rf4

Site:
position = -72
score = 5.28284
sequence = TTTTGACCCACGTCATAA

Gene: Gura_0769: SP0561-like superfamily hypothetical protein
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
SP0561-like superfamily hypothetical protein
frdX2
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ

Gene: Glov_2649: Ferredoxin fused to uncharacterized domain
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32

Gene: Geob_0944: Ferredoxin fused to uncharacterized domain
 
Geobacter sp. M21

Gene: GM21_1233: Ferredoxin fused to uncharacterized domain
 
Geobacter sulfurreducens PCA

Gene: GSU2660: Ferredoxin fused to uncharacterized domain
 
Geobacter uraniumreducens Rf4

Gene: Gura_0770: Ferredoxin fused to uncharacterized domain
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Ferredoxin fused to uncharacterized domain
COG3945
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ

Gene: Glov_2650: Hemerythrin HHE cation binding domain hypothetical protein
 
Geobacter metallireducens GS-15

Gene: Gmet_2516: Hemerythrin HHE cation binding domain hypothetical protein
 
Geobacter sp. FRC-32

Gene: Geob_0945: Hemerythrin HHE cation binding domain hypothetical protein
 
Geobacter sp. M21

Gene: GM21_1232: Hemerythrin HHE cation binding domain hypothetical protein
 
Geobacter sulfurreducens PCA

Gene: GSU2661: Hemerythrin HHE cation binding domain hypothetical protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_0771: Hemerythrin HHE cation binding domain hypothetical protein
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Hemerythrin HHE cation binding domain hypothetical protein
 
CRON 2.
dnrN
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ

Gene: Glov_0199: Nitric oxide-dependent regulator DnrN or NorA
 
Geobacter metallireducens GS-15

Gene: Gmet_3494: Nitric oxide-dependent regulator DnrN or NorA
 
Geobacter sp. FRC-32

Gene: Geob_2234: Nitric oxide-dependent regulator DnrN or NorA
*
Geobacter sp. M21

Site:
position = -123
score = 5.21975
sequence = TCTTGACCTGGATCATGA

Gene: GM21_3032: Nitric oxide-dependent regulator DnrN or NorA
 
Geobacter sulfurreducens PCA

Gene: GSU0849: Nitric oxide-dependent regulator DnrN or NorA
*
Geobacter uraniumreducens Rf4

Site:
position = -269
score = 5.28631
sequence = ATTTGACCTACATCAAGG

Gene: Gura_0432: Nitric oxide-dependent regulator DnrN or NorA
 
Pelobacter carbinolicus str. DSM 2380
*2
Pelobacter propionicus DSM 2379

Gene: Ppro_3700: Nitric oxide-dependent regulator DnrN or NorA

Site:
position = -132
score = 5.3593
sequence = CCATGACCTGGGTCAAAT

Gene: Ppro_1206: Nitric oxide-dependent regulator DnrN or NorA
Nitric oxide-dependent regulator DnrN or NorA
 
CRON 3.
ndh
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ

Gene: Glov_0215: NADH dehydrogenase (EC 1.6.99.3)
*
Geobacter metallireducens GS-15

Site:
position = -81
score = 5.2932
sequence = TTTTGACCACGGTCAAGG

Gene: Gmet_3041: NADH dehydrogenase (EC 1.6.99.3)
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
*
Geobacter sulfurreducens PCA

Site:
position = -75
score = 5.15781
sequence = GCTTGACCTGTGTCAAGG

Gene: GSU0493: NADH dehydrogenase (EC 1.6.99.3)
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
NADH dehydrogenase (EC 1.6.99.3)
COG2006
 
Desulfuromonas acetoxidans DSM 684
*
Geobacter lovleyi SZ

Site:
position = -288
score = 4.55439
sequence = TCATGACCGGCATCATGA

Gene: Glov_3209: Iron-sulfur cluster-binding protein
 
Geobacter metallireducens GS-15

Gene: Gmet_3040: Iron-sulfur cluster-binding protein
 
Geobacter sp. FRC-32

Gene: Geob_0754: Iron-sulfur cluster-binding protein
 
Geobacter sp. M21

Gene: GM21_0488: Iron-sulfur cluster-binding protein
 
Geobacter sulfurreducens PCA

Gene: GSU0494: Iron-sulfur cluster-binding protein
 2
Geobacter uraniumreducens Rf4

Gene: Gura_4011: Iron-sulfur cluster-binding protein

Gene: Gura_2519: Iron-sulfur cluster-binding protein
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0620: Iron-sulfur cluster-binding protein
 
Pelobacter propionicus DSM 2379

Gene: Ppro_3096: Iron-sulfur cluster-binding protein
Iron-sulfur cluster-binding protein
 
CRON 4.
nrfH
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0514: Cytochrome c nitrite reductase, small subunit NrfH
 
Geobacter lovleyi SZ

Gene: Glov_1043: Cytochrome c nitrite reductase, small subunit NrfH
*
Geobacter metallireducens GS-15

Site:
position = -112
score = 5.27321
sequence = CTTTGACATAAGTCAAGG

Gene: Gmet_0295: Cytochrome c nitrite reductase, small subunit NrfH
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
*
Geobacter sulfurreducens PCA

Site:
position = -165
score = 4.69908
sequence = TGTTGACTTGAGTCAAAC

Gene: GSU3155: Cytochrome c nitrite reductase, small subunit NrfH
 
Geobacter uraniumreducens Rf4

Gene: Gura_0664: Cytochrome c nitrite reductase, small subunit NrfH
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_2867: Cytochrome c nitrite reductase, small subunit NrfH
*2
Pelobacter propionicus DSM 2379

Site:
position = -212
score = 5.00784
sequence = AATTGATCTAGATCAAAA

Gene: Ppro_3707: Cytochrome c nitrite reductase, small subunit NrfH

Site:
position = -241
score = 4.8399
sequence = AATTGATTTTGGTCAAGG

Gene: Ppro_1199: Cytochrome c nitrite reductase, small subunit NrfH
Cytochrome c nitrite reductase, small subunit NrfH
nrfA
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0513: Cytochrome c552 precursor (EC 1.7.2.2)
 
Geobacter lovleyi SZ

Gene: Glov_1042: Cytochrome c552 precursor (EC 1.7.2.2)
*2
Geobacter metallireducens GS-15

Gene: Gmet_0294: Cytochrome c552 precursor (EC 1.7.2.2)

Site:
position = -196
score = 5.27321
sequence = CCTTGACTTATGTCAAAG

Gene: Gmet_0296: Cytochrome c552 precursor (EC 1.7.2.2)
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA

Gene: GSU3154: Cytochrome c552 precursor (EC 1.7.2.2)
 
Geobacter uraniumreducens Rf4

Gene: Gura_0665: Cytochrome c552 precursor (EC 1.7.2.2)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_2866: Cytochrome c552 precursor (EC 1.7.2.2)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1200: Cytochrome c552 precursor (EC 1.7.2.2)
Cytochrome c552 precursor (EC 1.7.2.2)
 
CRON 5.
ygbA
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0508: hypothetical protein involved in nitrosative stress
*
Geobacter lovleyi SZ

Site:
position = -51
score = 4.52031
sequence = TTTTGACCGTTGTCATGC

Gene: Glov_3448: hypothetical protein involved in nitrosative stress
*
Geobacter metallireducens GS-15

Site:
position = -2
score = 4.98817
sequence = TTTTGACATTGGTCATGA

Gene: Gmet_3184: hypothetical protein involved in nitrosative stress
*
Geobacter sp. FRC-32

Site:
position = -39
score = 4.68158
sequence = ATTTGACTTTTGTCATAT

Gene: Geob_1234: hypothetical protein involved in nitrosative stress
*
Geobacter sp. M21

Site:
position = -39
score = 5.1518
sequence = TCTTGACTTTGGTCATGA

Gene: GM21_0136: hypothetical protein involved in nitrosative stress
*
Geobacter sulfurreducens PCA

Site:
position = -51
score = 5.29168
sequence = TTTTGACCTGCGTCATGA

Gene: GSU3248: hypothetical protein involved in nitrosative stress
*
Geobacter uraniumreducens Rf4

Site:
position = -50
score = 4.76081
sequence = TTTTGACTTTTGTCATGT

Gene: Gura_0293: hypothetical protein involved in nitrosative stress
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0573: hypothetical protein involved in nitrosative stress
*
Pelobacter propionicus DSM 2379

Site:
position = -39
score = 5.17044
sequence = TATTGACCTGGGTCATGT

Gene: Ppro_0306: hypothetical protein involved in nitrosative stress
hypothetical protein involved in nitrosative stress
frdX1
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_3185: Ferredoxin fused to uncharacterized domain
 
Geobacter sp. FRC-32

Gene: Geob_1235: Ferredoxin fused to uncharacterized domain
 
Geobacter sp. M21

Gene: GM21_0137: Ferredoxin fused to uncharacterized domain
 
Geobacter sulfurreducens PCA

Gene: GSU3247: Ferredoxin fused to uncharacterized domain
 
Geobacter uraniumreducens Rf4

Gene: Gura_0294: Ferredoxin fused to uncharacterized domain
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -91
score = 4.74428
sequence = TCTTGACAGGAATCAAGG

Gene: Pcar_1702: Ferredoxin fused to uncharacterized domain
 
Pelobacter propionicus DSM 2379

Gene: Ppro_0307: Ferredoxin fused to uncharacterized domain
Ferredoxin fused to uncharacterized domain
 
CRON 6.
PF02085
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
*
Geobacter sp. M21

Site:
position = -117
score = 5.35522
sequence = CCTTGACTTTGGTCAAGG

Gene: GM21_4043: cytochrome c family protein, putative
*
Geobacter sulfurreducens PCA

Site:
position = -39
score = 5.20886
sequence = CTTTGACTTACGTCAAAC

Gene: GSU0105: cytochrome c family protein, putative
*
Geobacter uraniumreducens Rf4

Site:
position = -75
score = 5.14746
sequence = ATTTGACTTTAGTCAAGG

Gene: Gura_4255: cytochrome c family protein, putative
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
cytochrome c family protein, putative
 
CRON 7.
COG1917
 
Desulfuromonas acetoxidans DSM 684
*
Geobacter lovleyi SZ

Site:
position = -83
score = 4.90174
sequence = GTTTGACCTGTATCAAGG

Gene: Glov_2960: hypothetical protein
*
Geobacter metallireducens GS-15

Site:
position = -24
score = 5.24174
sequence = TTTTGACCGGGGTCAAAC

Gene: Gmet_0691: hypothetical protein
*
Geobacter sp. FRC-32

Site:
position = -87
score = 5.01705
sequence = TCTTGACCTGCATCAATT

Gene: Geob_1248: hypothetical protein
*
Geobacter sp. M21

Site:
position = -83
score = 4.40467
sequence = GATTGACTTGCATCAATT

Gene: GM21_0411: hypothetical protein
*
Geobacter sulfurreducens PCA

Site:
position = -295
score = 5.2567
sequence = CCTTGACCTGCATCAAGG

Site:
position = -78
score = 4.88222
sequence = CCTTGACTCCCGTCAATG

Gene: GSU0224: hypothetical protein
*
Geobacter uraniumreducens Rf4

Site:
position = -277
score = 5.23584
sequence = CCTTGACCTGCGTCAATT

Gene: Gura_0346: hypothetical protein
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379

Gene: Ppro_2801: hypothetical protein
hypothetical protein
 
CRON 8.
hcp
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -86
score = 5.15359
sequence = TCTTGATCTGGATCAAAT

Gene: Dace_0679: Hydroxylamine reductase (EC 1.7.-.-)
 
Geobacter lovleyi SZ
*
Geobacter metallireducens GS-15

Site:
position = -150
score = 5.5318
sequence = TCTTGACCAAGGTCAAAG

Gene: Gmet_2834: Hydroxylamine reductase (EC 1.7.-.-)
*
Geobacter sp. FRC-32

Site:
position = -150
score = 4.83692
sequence = TATTGACTTTTGTCAAAG

Gene: Geob_1617: Hydroxylamine reductase (EC 1.7.-.-)
*2
Geobacter sp. M21

Gene: GM21_3038: Hydroxylamine reductase (EC 1.7.-.-)

Site:
position = -117
score = 5.35311
sequence = TTATGACTTAGGTCAAGG

Gene: GM21_3228: Hydroxylamine reductase (EC 1.7.-.-)
*
Geobacter sulfurreducens PCA

Site:
position = -143
score = 5.50393
sequence = CCTTGACCCACGTCAAGG

Gene: GSU0674: Hydroxylamine reductase (EC 1.7.-.-)
*2
Geobacter uraniumreducens Rf4

Site:
position = -269
score = 5.4614
sequence = ACTTGACCAAGGTCAAAG

Gene: Gura_1364: Hydroxylamine reductase (EC 1.7.-.-)

Site:
position = -223
score = 4.91029
sequence = TATTGACTTTGATCAAGG

Gene: Gura_0663: Hydroxylamine reductase (EC 1.7.-.-)
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Hydroxylamine reductase (EC 1.7.-.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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