Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AcnR - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Tricarboxylic acid cycle
Effector: Citrate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152 3 2
Rhodococcus erythropolis PR4 3 2
Rhodococcus opacus B4 3 2
Rhodococcus sp. RHA1 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
icd
*
Nocardia farcinica IFM 10152

Site:
position = -144
score = 5.18038
sequence = CAGTACGCTCGTCTTG

Gene: nfa9230: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
*
Rhodococcus erythropolis PR4

Site:
position = -146
score = 5.18038
sequence = CAGTACGCTTGTCTTG

Gene: RER_20050: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
*
Rhodococcus opacus B4

Site:
position = -147
score = 5.18038
sequence = CAGTACGCTTGTCTTG

Gene: ROP_62970: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
*
Rhodococcus sp. RHA1

Site:
position = -146
score = 5.18038
sequence = CAGTACGCTTGTCTTG

Gene: RHA1_ro06238: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
CRON 2.
acnA
*
Nocardia farcinica IFM 10152

Site:
position = -129
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: nfa34830: Aconitate hydratase (EC 4.2.1.3)
*
Rhodococcus erythropolis PR4

Site:
position = -201
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: RER_30680: Aconitate hydratase (EC 4.2.1.3)
*
Rhodococcus opacus B4

Site:
position = -158
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: ROP_69950: Aconitate hydratase (EC 4.2.1.3)
*
Rhodococcus sp. RHA1

Site:
position = -158
score = 5.78986
sequence = CAGGACAAGCGTACTG

Gene: RHA1_ro07207: Aconitate hydratase (EC 4.2.1.3)
Aconitate hydratase (EC 4.2.1.3)
acnR
 
Nocardia farcinica IFM 10152

Gene: nfa34840: Aconitase gene transcriptional regulator AcnR, TetR family
 
Rhodococcus erythropolis PR4

Gene: RER_30670: Aconitase gene transcriptional regulator AcnR, TetR family
 
Rhodococcus opacus B4

Gene: ROP_69940: Aconitase gene transcriptional regulator AcnR, TetR family
 
Rhodococcus sp. RHA1

Gene: RHA1_ro07206: Aconitase gene transcriptional regulator AcnR, TetR family
Aconitase gene transcriptional regulator AcnR, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD