Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DtxR - Clostridia-3

Properties
Regulator type: Transcription factor
Regulator family: DtxR
Regulation mode: repressor
Biological process: Metal homeostasis
Effector: New effector
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridiales bacterium 1_7_47_FAA
Clostridium bolteae ATCC BAA-613
Clostridium nexile DSM 1787 12 2
Clostridium scindens ATCC 35704 12 2
Bacteroides pectinophilus ATCC 43243
Blautia hansenii DSM 20583
Bryantella formatexigens DSM 14469
Dorea formicigenerans ATCC 27755 3 1
Dorea longicatena DSM 13814 6 1
Eubacterium eligens ATCC 27750
Eubacterium rectale ATCC 33656
Roseburia intestinalis L1-82
Ruminococcus gnavus ATCC 29149
Ruminococcus lactaris ATCC 29176
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF09605
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
*2
Clostridium nexile DSM 1787

Gene: CLONEX_03801: Hypothetical bacterial integral membrane protein (Trep_Strep)

Site:
position = -50
score = 6.50187
sequence = GGTTAGTTTTAGCTAACC

Gene: CLONEX_00483: Hypothetical bacterial integral membrane protein (Trep_Strep)
*2
Clostridium scindens ATCC 35704

Site:
position = -50
score = 6.06066
sequence = GGTTAGTTATTGCTAATC

Gene: CLOSCI_00935: Hypothetical bacterial integral membrane protein (Trep_Strep)

Site:
position = -95
score = 5.82468
sequence = GGTTAGTTATAACTAACC

Gene: CLOSCI_02591: Hypothetical bacterial integral membrane protein (Trep_Strep)
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Dorea formicigenerans ATCC 27755
*
Dorea longicatena DSM 13814

Site:
position = -60
score = 5.71743
sequence = GGTTAGAACACTCTAACC

Gene: DORLON_00209: Hypothetical bacterial integral membrane protein (Trep_Strep)
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
Hypothetical bacterial integral membrane protein (Trep_Strep)
COG0619
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 2
Clostridium nexile DSM 1787

Gene: CLONEX_03802: ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene: CLONEX_00482: ABC-type cobalt transport system, permease component CbiQ and related transporters
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_02592: ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene: CLOSCI_00934: ABC-type cobalt transport system, permease component CbiQ and related transporters
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814

Gene: DORLON_00210: ABC-type cobalt transport system, permease component CbiQ and related transporters
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
ABC-type cobalt transport system, permease component CbiQ and related transporters
COG1123
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 2
Clostridium nexile DSM 1787

Gene: CLONEX_03803: ATPase components of various ABC-type transport systems, contain duplicated ATPase

Gene: CLONEX_00481: ATPase components of various ABC-type transport systems, contain duplicated ATPase
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_02593: ATPase components of various ABC-type transport systems, contain duplicated ATPase

Gene: CLOSCI_00933: ATPase components of various ABC-type transport systems, contain duplicated ATPase
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814

Gene: DORLON_00211: ATPase components of various ABC-type transport systems, contain duplicated ATPase
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
ATPase components of various ABC-type transport systems, contain duplicated ATPase
COG1132
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
*2
Clostridium nexile DSM 1787

Site:
position = -37
score = 6.17849
sequence = GGTTAGTTTTTTCTAACT

Gene: CLONEX_03805: ABC-type multidrug transport system, ATPase and permease components

Gene: CLONEX_00480: ABC-type multidrug transport system, ATPase and permease components
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_02594: ABC-type multidrug transport system, ATPase and permease components

Gene: CLOSCI_00932: ABC-type multidrug transport system, ATPase and permease components
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
*
Dorea formicigenerans ATCC 27755

Site:
position = -53
score = 6.3516
sequence = GGTTAGATTAAGCTAACC

Gene: DORFOR_03080: ABC-type multidrug transport system, ATPase and permease components
 
Dorea longicatena DSM 13814

Gene: DORLON_00212: ABC-type multidrug transport system, ATPase and permease components
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
ABC-type multidrug transport system, ATPase and permease components
COG2274
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 2
Clostridium nexile DSM 1787

Gene: CLONEX_03804: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Gene: CLONEX_00479: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_00931: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Gene: CLOSCI_02595: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_03079: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
 
Dorea longicatena DSM 13814

Gene: DORLON_00213: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
dtxR
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 2
Clostridium nexile DSM 1787

Gene: CLONEX_03800: Putative metal-dependent transcriptional regulator, DtxR family

Gene: CLONEX_00478: Putative metal-dependent transcriptional regulator, DtxR family
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_00930: Putative metal-dependent transcriptional regulator, DtxR family

Gene: CLOSCI_02596: Putative metal-dependent transcriptional regulator, DtxR family
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_03078: Putative metal-dependent transcriptional regulator, DtxR family
 
Dorea longicatena DSM 13814

Gene: DORLON_00214: Putative metal-dependent transcriptional regulator, DtxR family
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
Putative metal-dependent transcriptional regulator, DtxR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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