Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GguR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 7 4
Ralstonia eutropha H16 7 4
Ralstonia eutropha JMP134 8 5
Ralstonia metallidurans CH34 8 6
Ralstonia pickettii 12J 6 2
Ralstonia solanacearum GMI1000 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
kdgD
*
Cupriavidus taiwanensis

Site:
position = -94
score = 4.88863
sequence = TTGTCGTACGATGACTG

Gene: RALTA_B0137: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Ralstonia eutropha H16

Site:
position = -94
score = 4.83203
sequence = TTGTCATACGATGACTG

Site:
position = -289
score = 5.0338
sequence = ACGTTGTCCTACAACAT

Gene: H16_B0131: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Ralstonia eutropha JMP134

Site:
position = -102
score = 4.82381
sequence = TAGTTGTACGATGACGT

Gene: Reut_B3688: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Ralstonia metallidurans CH34

Site:
position = -109
score = 4.62496
sequence = TGGTTGTACGATGACTT

Gene: Rmet_4736: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Ralstonia pickettii 12J

Gene: Rpic_4452: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Ralstonia solanacearum GMI1000

Gene: RS05369: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
kgsD
 
Cupriavidus taiwanensis

Gene: RALTA_B0136: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Ralstonia eutropha H16

Gene: H16_B0130: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Ralstonia eutropha JMP134

Site:
position = -97
score = 4.252
sequence = ATGTCATATGATGTCCT

Gene: Reut_B3713: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Ralstonia metallidurans CH34

Site:
position = -91
score = 4.37126
sequence = ATGATGTCTTACGACAA

Site:
position = -98
score = 4.54771
sequence = ATGTCATATGATGTCTT

Gene: Rmet_0832: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Ralstonia pickettii 12J

Gene: Rpic_4451: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Ralstonia solanacearum GMI1000

Gene: RS05368: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
gguR
*
Cupriavidus taiwanensis

Site:
position = -91
score = 4.90804
sequence = CTGTCATCGTATGACTG

Gene: RALTA_B0132: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Ralstonia eutropha H16

Site:
position = -81
score = 4.90804
sequence = CTGTCATCGTATGACTG

Gene: H16_B0126: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Ralstonia eutropha JMP134

Site:
position = -80
score = 5.08749
sequence = CAGTCGTCGTATGACTT

Gene: Reut_B3714: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Ralstonia metallidurans CH34

Site:
position = -30
score = 4.79178
sequence = CGGTCGTCGTATGACTT

Gene: Rmet_0833: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Ralstonia pickettii 12J

Site:
position = -85
score = 4.77866
sequence = CAGTCGTCGTACAACAC

Gene: Rpic_0945: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Ralstonia solanacearum GMI1000

Site:
position = -90
score = 5.07595
sequence = CAGTCGTCGTACAACAT

Gene: RS04109: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
gudP1
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
*
Ralstonia eutropha JMP134

Site:
position = -67
score = 5.11015
sequence = CAGTCATACGACGACAT

Site:
position = -283
score = 4.82381
sequence = ACGTCATCGTACAACTA

Gene: Reut_B3689: D-glucarate permease
*
Ralstonia metallidurans CH34

Site:
position = -78
score = 5.19145
sequence = AAGTCGTATGACGACAT

Gene: Rmet_4735: D-glucarate permease
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
D-glucarate permease
garD
*
Cupriavidus taiwanensis

Site:
position = -155
score = 4.85603
sequence = ATGTTGTCGTACAACAC

Site:
position = -54
score = 4.99154
sequence = ATGTTGTCAGACAACGT

Gene: RALTA_B0782: D-galactarate dehydratase (EC 4.2.1.42)
*
Ralstonia eutropha H16

Site:
position = -57
score = 4.96887
sequence = AAGTTGTCAGACAACGT

Site:
position = -157
score = 4.55524
sequence = GTGTTATCGTACAACTA

Gene: H16_B0965: D-galactarate dehydratase (EC 4.2.1.42)
 
Ralstonia eutropha JMP134

Gene: Reut_B3690: D-galactarate dehydratase (EC 4.2.1.42)
 
Ralstonia metallidurans CH34

Gene: Rmet_4734: D-galactarate dehydratase (EC 4.2.1.42)
 
Ralstonia pickettii 12J

Gene: Rpic_4448: D-galactarate dehydratase (EC 4.2.1.42)
 
Ralstonia solanacearum GMI1000

Gene: RSp0830: D-galactarate dehydratase (EC 4.2.1.42)
D-galactarate dehydratase (EC 4.2.1.42)
 
CRON 2.
gudD
*
Cupriavidus taiwanensis

Site:
position = -109
score = 4.90804
sequence = CAGTCATACGATGACAG

Gene: RALTA_B0133: Glucarate dehydratase (EC 4.2.1.40)
*
Ralstonia eutropha H16

Site:
position = -90
score = 4.90804
sequence = CAGTCATACGATGACAG

Gene: H16_B0127: Glucarate dehydratase (EC 4.2.1.40)
*
Ralstonia eutropha JMP134

Site:
position = -87
score = 5.08749
sequence = AAGTCATACGACGACTG

Gene: Reut_B3715: Glucarate dehydratase (EC 4.2.1.40)
*
Ralstonia metallidurans CH34

Site:
position = -80
score = 4.79178
sequence = AAGTCATACGACGACCG

Gene: Rmet_0834: Glucarate dehydratase (EC 4.2.1.40)
*
Ralstonia pickettii 12J

Site:
position = -17
score = 4.77866
sequence = GTGTTGTACGACGACTG

Gene: Rpic_0946: Glucarate dehydratase (EC 4.2.1.40)
*
Ralstonia solanacearum GMI1000

Site:
position = -26
score = 5.07595
sequence = ATGTTGTACGACGACTG

Gene: RSc1079: Glucarate dehydratase (EC 4.2.1.40)
Glucarate dehydratase (EC 4.2.1.40)
exuT
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_0947: Hexuronate transporter, MFS family
 
Ralstonia solanacearum GMI1000

Gene: RSc1080: Hexuronate transporter, MFS family
Hexuronate transporter, MFS family
agl
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_0948: Alpha-glucosidase (EC 3.2.1.20)
 
Ralstonia solanacearum GMI1000

Gene: RS04106: Alpha-glucosidase (EC 3.2.1.20)
Alpha-glucosidase (EC 3.2.1.20)
omp
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_0949: Outer membrane porin protein 32 precursor
 
Ralstonia solanacearum GMI1000

Gene: RS04105: Outer membrane porin protein 32 precursor
Outer membrane porin protein 32 precursor
aldE
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_0950: Aldose 1-epimerase
 
Ralstonia solanacearum GMI1000

Gene: RS04104: Aldose 1-epimerase
Aldose 1-epimerase
tctC2
 
Cupriavidus taiwanensis

Gene: RALTA_B0134: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia eutropha H16

Gene: H16_B0128: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia eutropha JMP134

Gene: Reut_B3716: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia metallidurans CH34

Gene: Rmet_0835: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
tctC1
 
Cupriavidus taiwanensis

Gene: RALTA_B0135: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia eutropha H16

Gene: H16_B0129: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Ralstonia eutropha JMP134

Site:
position = -45
score = 4.95514
sequence = ATGTTGTATGACGACTG

Site:
position = -180
score = 4.99975
sequence = ATGTCATCAGACAACAG

Gene: Reut_A1006: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Ralstonia metallidurans CH34

Site:
position = -161
score = 5.16604
sequence = AAGTCATCCGACGACTG

Site:
position = -44
score = 4.06023
sequence = TAGTTGTACGACATCCT

Gene: Rmet_0971: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD