Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GguR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 67 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383 14 9
Burkholderia cepacia AMMD 17 10
Burkholderia vietnamiensis G4 12 10
Burkholderia glumae BGR1 16 10
Burkholderia xenovorans LB400 12 6
Burkholderia phymatum STM815 9 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuP
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -347
score = 4.83203
sequence = CAGTCATCCTATGACAA

Gene: Bcep18194_C7436: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
*
Burkholderia cepacia AMMD

Site:
position = -341
score = 4.71251
sequence = CAGTCATCCTATGACGA

Gene: Bamb_6123: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
*
Burkholderia vietnamiensis G4

Site:
position = -329
score = 4.85371
sequence = CAGTCATCGGACAACTA

Gene: Bcep1808_6572: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
*
Burkholderia glumae BGR1

Site:
position = -497
score = 4.89854
sequence = CAGTCGTCTTATAACAT

Gene: bglu_2g13770: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
*
Burkholderia xenovorans LB400

Site:
position = -322
score = 5.24413
sequence = ATGTCGTCGTACAACAT

Gene: Bxe_B1798: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Burkholderia phymatum STM815
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_C7435: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Burkholderia cepacia AMMD

Gene: Bamb_6124: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_6571: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Burkholderia glumae BGR1

Gene: bglu_2g13760: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Burkholderia xenovorans LB400

Gene: Bxe_B1797: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Burkholderia phymatum STM815
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_C7434: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Burkholderia cepacia AMMD

Gene: Bamb_6125: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_6570: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Burkholderia glumae BGR1

Gene: bglu_2g13750: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Burkholderia xenovorans LB400

Gene: Bxe_B1796: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Burkholderia phymatum STM815
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
uxuF2
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD

Gene: Bamb_6126: Predicted uronate lactonase, PF10282 family
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Predicted uronate lactonase, PF10282 family
mcp
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD

Gene: Bamb_6127: methyl-accepting chemotaxis sensory transducer
*
Burkholderia vietnamiensis G4

Site:
position = -303
score = 4.83363
sequence = ATGTTATACGATGACAC

Gene: Bcep1808_4374: methyl-accepting chemotaxis sensory transducer
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_5591: methyl-accepting chemotaxis sensory transducer
methyl-accepting chemotaxis sensory transducer
omp
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_B1795: Outer membrane protein (porin)
 
Burkholderia phymatum STM815
Outer membrane protein (porin)
 
CRON 2.
garL
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
*
Burkholderia phymatum STM815

Site:
position = -77
score = 4.52301
sequence = CAGACATCCTATGACAT

Site:
position = -200
score = 4.50213
sequence = CGGTCATCGTACAACAA

Gene: Bphy_6527: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
garR
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_6528: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
uxuF
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_A5499: Predicted uronate lactonase, PF10282 family
 
Burkholderia cepacia AMMD

Gene: Bamb_2221: Predicted uronate lactonase, PF10282 family
*
Burkholderia vietnamiensis G4

Site:
position = -239
score = 5.27833
sequence = ATGTCATACGACGACAT

Gene: Bcep1808_2255: Predicted uronate lactonase, PF10282 family
*
Burkholderia glumae BGR1

Site:
position = -114
score = 4.86792
sequence = AAGTTATATGATGACGT

Gene: bglu_2g05570: Predicted uronate lactonase, PF10282 family
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_6529: Predicted uronate lactonase, PF10282 family
Predicted uronate lactonase, PF10282 family
gudD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -268
score = 5.16604
sequence = AAGTCATCCGACGACTG

Gene: Bcep18194_A4275: Glucarate dehydratase (EC 4.2.1.40)
*
Burkholderia cepacia AMMD

Site:
position = -270
score = 5.16604
sequence = AAGTCATCCGACGACTG

Gene: Bamb_1041: Glucarate dehydratase (EC 4.2.1.40)
*
Burkholderia vietnamiensis G4

Site:
position = -333
score = 5.16604
sequence = AAGTCATCCGACGACTG

Gene: Bcep1808_1081: Glucarate dehydratase (EC 4.2.1.40)
*
Burkholderia glumae BGR1

Site:
position = -207
score = 5.02574
sequence = ATGTCATCAGACAACGT

Gene: bglu_2g00180: Glucarate dehydratase (EC 4.2.1.40)
*
Burkholderia xenovorans LB400

Site:
position = -106
score = 5.04202
sequence = CTGTCATCGTACAACAT

Gene: Bxe_B0539: Glucarate dehydratase (EC 4.2.1.40)
 
Burkholderia phymatum STM815

Gene: Bphy_6530: Glucarate dehydratase (EC 4.2.1.40)
Glucarate dehydratase (EC 4.2.1.40)
kdgD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -198
score = 4.91333
sequence = TAGTCATCATACGACAT

Site:
position = -92
score = 4.84648
sequence = TCGTTGTACGATGACAT

Gene: Bcep18194_B0332: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Burkholderia cepacia AMMD

Site:
position = -207
score = 4.91333
sequence = TAGTCATCATACGACAT

Site:
position = -102
score = 4.84648
sequence = TCGTTGTACGATGACAT

Gene: Bamb_4676: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Burkholderia vietnamiensis G4

Site:
position = -198
score = 4.91333
sequence = TAGTCATCATACGACAT

Site:
position = -92
score = 4.77071
sequence = GCGTTGTACGATGACAT

Gene: Bcep1808_3561: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*2
Burkholderia glumae BGR1

Site:
position = -186
score = 4.89854
sequence = CAGTCATCATACAACAT

Site:
position = -75
score = 5.18752
sequence = ATGTTGTACGATGACAT

Gene: bglu_2g03730: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)

Gene: bglu_2g00190: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Burkholderia xenovorans LB400

Site:
position = -83
score = 4.84648
sequence = TTGTTGTACGATGACGT

Site:
position = -178
score = 5.068
sequence = ACGTCATCCTACAACAT

Gene: Bxe_B1802: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Burkholderia phymatum STM815

Gene: Bphy_6531: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudP
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -25
score = 5.03929
sequence = ACGTCATACGACGACGT

Gene: Bcep18194_B0327: D-glucarate permease
*
Burkholderia cepacia AMMD

Site:
position = -140
score = 4.14412
sequence = ATGTCTGCCGACGACAT

Gene: Bamb_4680: D-glucarate permease
*
Burkholderia vietnamiensis G4

Site:
position = -26
score = 5.15881
sequence = ATGTCATACGACGACGT

Gene: Bcep1808_3563: D-glucarate permease
*
Burkholderia glumae BGR1

Site:
position = -69
score = 5.22146
sequence = AAGTTGTACGACGACAT

Gene: bglu_2g03700: D-glucarate permease
 
Burkholderia xenovorans LB400

Gene: Bxe_B1803: D-glucarate permease
 
Burkholderia phymatum STM815
D-glucarate permease
gguT
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -89
score = 5.27833
sequence = ATGTCATACGACGACAT

Gene: Bcep18194_A5498: Predicted hexarate transporter
*
Burkholderia cepacia AMMD

Site:
position = -86
score = 5.27833
sequence = ATGTCATACGACGACAT

Gene: Bamb_2220: Predicted hexarate transporter
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Predicted hexarate transporter
 
CRON 3.
kgsD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -239
score = 5.03929
sequence = ACGTCGTCGTATGACGT

Gene: Bcep18194_B0328: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Burkholderia cepacia AMMD

Site:
position = -240
score = 5.15881
sequence = ACGTCGTCGTATGACAT

Site:
position = -71
score = 4.14412
sequence = ATGTCGTCGGCAGACAT

Gene: Bamb_4679: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Burkholderia vietnamiensis G4

Site:
position = -241
score = 5.15881
sequence = ACGTCGTCGTATGACAT

Gene: Bcep1808_3562: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Burkholderia glumae BGR1

Site:
position = -212
score = 5.22146
sequence = ATGTCGTCGTACAACTT

Gene: bglu_2g03710: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Burkholderia xenovorans LB400

Site:
position = -48
score = 4.86915
sequence = ATGTTGTAGGATGACCT

Site:
position = -160
score = 4.39013
sequence = AAGTCGTCGTATATCTA

Gene: Bxe_B1805: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
*
Burkholderia phymatum STM815

Site:
position = -48
score = 4.50213
sequence = TTGTTGTACGATGACCG

Site:
position = -171
score = 4.52301
sequence = ATGTCATAGGATGTCTG

Gene: Bphy_6526: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
CRON 4.
garP
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
*
Burkholderia phymatum STM815

Site:
position = -92
score = 4.8835
sequence = ATGTCGTCAGACAACCT

Site:
position = -223
score = 4.95643
sequence = ACGTCGTCGTACAACTG

Gene: Bphy_6596: D-galactarate permease
D-galactarate permease
 
CRON 5.
pgl
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
*
Burkholderia cepacia AMMD

Site:
position = -73
score = 4.61137
sequence = ATGTAGTACGACGACGT

Gene: Bamb_4904: Polygalacturonase (EC 3.2.1.15)
*
Burkholderia vietnamiensis G4

Site:
position = -70
score = 4.64131
sequence = ATGTGATACGACGACGT

Gene: Bcep1808_3851: Polygalacturonase (EC 3.2.1.15)
*
Burkholderia glumae BGR1

Site:
position = -77
score = 5.1022
sequence = ATGTCATCGTATGACGT

Gene: bglu_2g07210: Polygalacturonase (EC 3.2.1.15)
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Polygalacturonase (EC 3.2.1.15)
 
CRON 6.
exuT
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -196
score = 4.97709
sequence = CAGTCGTCAGATAACAT

Gene: Bcep18194_B1871: Hexuronate transporter, MFS family
*
Burkholderia cepacia AMMD

Site:
position = -106
score = 4.85757
sequence = CAGTCGTCAGATAACGT

Gene: Bamb_3566: Hexuronate transporter, MFS family
 
Burkholderia vietnamiensis G4
*
Burkholderia glumae BGR1

Site:
position = -90
score = 4.56998
sequence = AAGTGGTACGATGACTG

Site:
position = -180
score = 4.49382
sequence = ACGTTGTCTGACGAGAT

Gene: bglu_2g04250: Hexuronate transporter, MFS family
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_3128: Hexuronate transporter, MFS family
Hexuronate transporter, MFS family
agl
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B1872: Alpha-glucosidase (EC 3.2.1.20)
 
Burkholderia cepacia AMMD

Gene: Bamb_3565: Alpha-glucosidase (EC 3.2.1.20)
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1

Gene: bglu_2g04260: Alpha-glucosidase (EC 3.2.1.20)
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_3127: Alpha-glucosidase (EC 3.2.1.20)
Alpha-glucosidase (EC 3.2.1.20)
omp
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B1873: Outer membrane porin protein 32 precursor
 
Burkholderia cepacia AMMD

Gene: Bamb_3564: Outer membrane porin protein 32 precursor
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1

Gene: bglu_2g04270: Outer membrane porin protein 32 precursor
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815

Gene: Bphy_3126: Outer membrane porin protein 32 precursor
Outer membrane porin protein 32 precursor
 
CRON 7.
garD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -154
score = 4.84648
sequence = ATGTCATCGTACAACGA

Site:
position = -48
score = 4.91333
sequence = ATGTCGTATGATGACTA

Gene: Bcep18194_B0333: D-galactarate dehydratase (EC 4.2.1.42)
*
Burkholderia cepacia AMMD

Site:
position = -48
score = 4.91333
sequence = ATGTCGTATGATGACTA

Site:
position = -153
score = 4.84648
sequence = ATGTCATCGTACAACGA

Gene: Bamb_4675: D-galactarate dehydratase (EC 4.2.1.42)
*
Burkholderia vietnamiensis G4

Site:
position = -49
score = 4.91333
sequence = ATGTCGTATGATGACTA

Site:
position = -155
score = 4.77071
sequence = ATGTCATCGTACAACGC

Gene: Bcep1808_3560: D-galactarate dehydratase (EC 4.2.1.42)
*
Burkholderia glumae BGR1

Site:
position = -164
score = 5.18752
sequence = ATGTCATCGTACAACAT

Site:
position = -53
score = 4.89854
sequence = ATGTTGTATGATGACTG

Gene: bglu_2g03740: D-galactarate dehydratase (EC 4.2.1.42)
*
Burkholderia xenovorans LB400

Site:
position = -159
score = 4.84648
sequence = ACGTCATCGTACAACAA

Site:
position = -64
score = 5.068
sequence = ATGTTGTAGGATGACGT

Gene: Bxe_B1801: D-galactarate dehydratase (EC 4.2.1.42)
*
Burkholderia phymatum STM815

Site:
position = -67
score = 4.77071
sequence = ATGTTGTACGATGACGC

Gene: Bphy_6382: D-galactarate dehydratase (EC 4.2.1.42)
D-galactarate dehydratase (EC 4.2.1.42)
udh
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B2716: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia cepacia AMMD

Gene: Bamb_5236: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3989: Uronate dehydrogenase (EC 1.1.1.203)
*
Burkholderia glumae BGR1

Site:
position = -94
score = 4.37422
sequence = CAGTCATCGTATAAGAT

Gene: bglu_1g09950: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1800: Uronate dehydrogenase (EC 1.1.1.203)
 
Burkholderia phymatum STM815

Gene: Bphy_5673: Uronate dehydrogenase (EC 1.1.1.203)
Uronate dehydrogenase (EC 1.1.1.203)
uxuL
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_B1799: Predicted glucuronolactone/galactarolactone lactonase
 
Burkholderia phymatum STM815
Predicted glucuronolactone/galactarolactone lactonase
gguR
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -107
score = 5.16604
sequence = CAGTCGTCGGATGACTT

Gene: Bcep18194_A4276: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Burkholderia cepacia AMMD

Site:
position = -107
score = 5.16604
sequence = CAGTCGTCGGATGACTT

Gene: Bamb_1043: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Burkholderia vietnamiensis G4

Site:
position = -107
score = 5.16604
sequence = CAGTCGTCGGATGACTT

Gene: Bcep1808_1082: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Burkholderia glumae BGR1

Site:
position = -99
score = 5.10943
sequence = CAGTCATCGGATGACTT

Gene: bglu_1g09940: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Burkholderia xenovorans LB400

Site:
position = -70
score = 4.80287
sequence = CAGTCATCAGACGACGG

Gene: Bxe_B1804: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Burkholderia phymatum STM815

Site:
position = -51
score = 4.69554
sequence = GCGTTGTCGGACAACGT

Gene: Bphy_6525: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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