Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GguR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 11 3
Acidovorax sp. JS42 10 3
Comamonas testosteroni KF-1 11 3
Delftia acidovorans SPH-1 11 3
Leptothrix cholodnii SP-6 14 4
Methylibium petroleiphilum PM1 6 2
Polaromonas naphthalenivorans CJ2 12 2
Polaromonas sp. JS666 11 2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 15 3
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
udh
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -17
score = 5.31837
sequence = GCGTTGTACGACAACAT

Gene: Aave_2590: Uronate dehydrogenase (EC 1.1.1.203)
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Leptothrix cholodnii SP-6

Site:
position = -95
score = 5.4475
sequence = ACGTTGTACGACAACTG

Gene: Lcho_1115: Uronate dehydrogenase (EC 1.1.1.203)
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -98
score = 4.72113
sequence = GAGTCATCAGACAACGT

Gene: Pnap_1591: Uronate dehydrogenase (EC 1.1.1.203)
*
Polaromonas sp. JS666

Site:
position = -97
score = 4.61422
sequence = CAGTCATCAGACAACCT

Gene: Bpro_3109: Uronate dehydrogenase (EC 1.1.1.203)
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -39
score = 5.10689
sequence = TAGTTGTACGACAACAG

Gene: Vapar_1726: Uronate dehydrogenase (EC 1.1.1.203)
 
Verminephrobacter eiseniae EF01-2
Uronate dehydrogenase (EC 1.1.1.203)
uxuL1
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2591: Predicted glucuronolactone/galactarolactone lactonase
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1592: Predicted glucuronolactone/galactarolactone lactonase
 
Polaromonas sp. JS666

Gene: Bpro_3108: Predicted glucuronolactone/galactarolactone lactonase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1725: Predicted glucuronolactone/galactarolactone lactonase
 
Verminephrobacter eiseniae EF01-2
Predicted glucuronolactone/galactarolactone lactonase
uxuP
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2592: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1114: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1593: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Polaromonas sp. JS666

Gene: Bpro_3107: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1724: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
 
Verminephrobacter eiseniae EF01-2
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2593: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1113: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1594: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Polaromonas sp. JS666

Gene: Bpro_3106: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1723: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
 
Verminephrobacter eiseniae EF01-2
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2594: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1112: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1595: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Polaromonas sp. JS666

Gene: Bpro_3105: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1722: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
 
Verminephrobacter eiseniae EF01-2
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
kdgD
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2587: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Acidovorax sp. JS42

Gene: Ajs_1993: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4121: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Delftia acidovorans SPH-1

Gene: Daci_0251: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
*
Leptothrix cholodnii SP-6

Site:
position = -65
score = 5.13193
sequence = ATGTTGTACGATGACAT

Site:
position = -58
score = 4.38503
sequence = ACGATGACATACAACAT

Gene: Lcho_1117: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1596: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Polaromonas sp. JS666

Gene: Bpro_3419: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1729: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
 
Verminephrobacter eiseniae EF01-2
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
garD
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2595: D-galactarate dehydratase (EC 4.2.1.42)
 
Acidovorax sp. JS42

Gene: Ajs_1998: D-galactarate dehydratase (EC 4.2.1.42)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4116: D-galactarate dehydratase (EC 4.2.1.42)
 
Delftia acidovorans SPH-1

Gene: Daci_0256: D-galactarate dehydratase (EC 4.2.1.42)
*
Leptothrix cholodnii SP-6

Site:
position = -210
score = 4.82755
sequence = ACGTCATCGTATAACTT

Site:
position = -66
score = 5.66998
sequence = ATGTTGTACGACAACAT

Site:
position = -217
score = 4.14048
sequence = TTGTTGTACGTCATCGT

Gene: Lcho_2484: D-galactarate dehydratase (EC 4.2.1.42)
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1597: D-galactarate dehydratase (EC 4.2.1.42)
 
Polaromonas sp. JS666

Gene: Bpro_3104: D-galactarate dehydratase (EC 4.2.1.42)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1721: D-galactarate dehydratase (EC 4.2.1.42)
 
Verminephrobacter eiseniae EF01-2
D-galactarate dehydratase (EC 4.2.1.42)
kgsD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4125: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Delftia acidovorans SPH-1

Gene: Daci_0247: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Leptothrix cholodnii SP-6

Gene: Lcho_1119: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1598: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Polaromonas sp. JS666

Gene: Bpro_3422: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
garL
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1122: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0974: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1599: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
 
Polaromonas sp. JS666

Gene: Bpro_3103: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
garR
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1123: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0975: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1600: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
Polaromonas sp. JS666

Gene: Bpro_3102: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3956: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
 
Verminephrobacter eiseniae EF01-2
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
tctC1
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -38
score = 4.76219
sequence = CAGTTGTATGATGACGT

Site:
position = -31
score = 4.5835
sequence = ATGATGACGTACAACAT

Gene: Aave_2588: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Acidovorax sp. JS42

Site:
position = -51
score = 5.08072
sequence = ATGTTGTACGATGACGT

Site:
position = -44
score = 4.27912
sequence = ACGATGACGTATAACTT

Gene: Ajs_1994: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Comamonas testosteroni KF-1

Site:
position = -41
score = 4.4101
sequence = TAGTTGTATGATGACTG

Gene: CtesDRAFT_4120: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Delftia acidovorans SPH-1

Site:
position = -43
score = 5.32743
sequence = CAGTTGTACGACAACTG

Gene: Daci_0252: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Leptothrix cholodnii SP-6

Gene: Lcho_1120: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
*
Methylibium petroleiphilum PM1

Site:
position = -77
score = 4.12899
sequence = ACGATGACGTACAACTA

Site:
position = -84
score = 5.08072
sequence = ATGTTGTACGATGACGT

Gene: Mpe_A0972: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1601: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Polaromonas sp. JS666

Gene: Bpro_3101: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -44
score = 4.55736
sequence = TAGTTGTACGATGACTG

Site:
position = -37
score = 4.18418
sequence = ACGATGACTGACAACAC

Gene: Vapar_1728: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Verminephrobacter eiseniae EF01-2
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
aldE
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3100: Aldose 1-epimerase (EC 5.1.3.3)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Aldose 1-epimerase (EC 5.1.3.3)
COG1028
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1720: short-chain dehydrogenase/reductase SDR
 
Verminephrobacter eiseniae EF01-2
short-chain dehydrogenase/reductase SDR
Daci_0982
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1719: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
uxuF
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1718: Predicted uronate lactonase, PF10282 family
 
Verminephrobacter eiseniae EF01-2
Predicted uronate lactonase, PF10282 family
tctC2
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2597: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Acidovorax sp. JS42

Gene: Ajs_1997: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4117: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Delftia acidovorans SPH-1

Gene: Daci_0255: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1717: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Verminephrobacter eiseniae EF01-2
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
uxuL2
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2596: Predicted glucuronolactone/galactarolactone lactonase
 
Acidovorax sp. JS42

Gene: Ajs_1999: Predicted glucuronolactone/galactarolactone lactonase
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_0257: Predicted glucuronolactone/galactarolactone lactonase
 
Leptothrix cholodnii SP-6

Gene: Lcho_1111: Predicted glucuronolactone/galactarolactone lactonase
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0705: Predicted glucuronolactone/galactarolactone lactonase
 
Verminephrobacter eiseniae EF01-2
Predicted glucuronolactone/galactarolactone lactonase
tctC3
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3624: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Acidovorax sp. JS42

Gene: Ajs_1992: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4122: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Delftia acidovorans SPH-1

Gene: Daci_0250: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
CtesDRAFT_4123
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4123: Uncharacterized protein UPF0065
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Uncharacterized protein UPF0065
serA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_1991: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4211: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Delftia acidovorans SPH-1

Gene: Daci_0249: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Leptothrix cholodnii SP-6

Gene: Lcho_1121: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0973: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
gudD
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3623: Glucarate dehydratase (EC 4.2.1.40)
 
Acidovorax sp. JS42

Gene: Ajs_1990: Glucarate dehydratase (EC 4.2.1.40)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4124: Glucarate dehydratase (EC 4.2.1.40)
 
Delftia acidovorans SPH-1

Gene: Daci_0248: Glucarate dehydratase (EC 4.2.1.40)
 
Leptothrix cholodnii SP-6

Gene: Lcho_1118: Glucarate dehydratase (EC 4.2.1.40)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0970: Glucarate dehydratase (EC 4.2.1.40)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1130: Glucarate dehydratase (EC 4.2.1.40)
 
Polaromonas sp. JS666

Gene: Bpro_3421: Glucarate dehydratase (EC 4.2.1.40)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1731: Glucarate dehydratase (EC 4.2.1.40)
 
Verminephrobacter eiseniae EF01-2
Glucarate dehydratase (EC 4.2.1.40)
garK
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0976: D-glycerate 2-kinase (EC 2.7.1.-)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
D-glycerate 2-kinase (EC 2.7.1.-)
gudD2
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -74
score = 5.32938
sequence = ACGTTATCAGACAACAT

Gene: Ajs_1996: Glucarate dehydratase (EC 4.2.1.40)
*
Comamonas testosteroni KF-1

Site:
position = -80
score = 5.49871
sequence = CAGTTGTACGACAACAT

Gene: CtesDRAFT_4118: Glucarate dehydratase (EC 4.2.1.40)
*
Delftia acidovorans SPH-1

Site:
position = -73
score = 5.60729
sequence = AAGTTGTACGACAACGT

Gene: Daci_0254: Glucarate dehydratase (EC 4.2.1.40)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Glucarate dehydratase (EC 4.2.1.40)
Vapar_1730
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_1730: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 2.
gguR
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -38
score = 5.31837
sequence = ATGTTGTCGTACAACGC

Gene: Aave_2589: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Acidovorax sp. JS42

Site:
position = -39
score = 5.32938
sequence = ATGTTGTCTGATAACGT

Gene: Ajs_1995: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Comamonas testosteroni KF-1

Site:
position = -38
score = 5.49871
sequence = ATGTTGTCGTACAACTG

Gene: CtesDRAFT_4119: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Delftia acidovorans SPH-1

Site:
position = -26
score = 5.60729
sequence = ACGTTGTCGTACAACTT

Gene: Daci_0253: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Leptothrix cholodnii SP-6

Site:
position = -73
score = 5.4475
sequence = CAGTTGTCGTACAACGT

Gene: Lcho_1116: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Methylibium petroleiphilum PM1

Site:
position = -67
score = 4.89293
sequence = CGGTTGTCATACAACTG

Gene: Mpe_A0971: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Polaromonas naphthalenivorans CJ2

Site:
position = -58
score = 4.72113
sequence = ACGTTGTCTGATGACTC

Gene: Pnap_1590: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
*
Polaromonas sp. JS666

Site:
position = -59
score = 4.61422
sequence = AGGTTGTCTGATGACTG

Gene: Bpro_3110: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -39
score = 5.10689
sequence = CTGTTGTCGTACAACTA

Gene: Vapar_1727: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
 
Verminephrobacter eiseniae EF01-2
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD