Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CsoR - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: CsoR
Regulation mode: repressor
Biological process: Copper resistance
Effector: Copper ion, (Cu+)
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 23 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 6 3
Arthrobacter chlorophenolicus A6 4 2
Arthrobacter sp. FB24 4 2
Beutenbergia cavernae DSM 12333 5 3
Brachybacterium faecium DSM 4810 5 2
Brevibacterium linens BL2 3 1
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649 4 1
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201 3 1
Kytococcus sedentarius DSM 20547 6 2
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
copB
 
Arthrobacter aurescens TC1

Gene: AAur_pTC20028: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Arthrobacter chlorophenolicus A6

Site:
position = -147
score = 6.52469
sequence = ATACCCCCTAGGGGTAT

Gene: Achl_3030: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Arthrobacter sp. FB24

Site:
position = -67
score = 6.66601
sequence = ATACCCCCTGGGGGTAT

Gene: Arth_0197: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Beutenbergia cavernae DSM 12333

Site:
position = -75
score = 6.52469
sequence = ATACCCCTAGGGGGTAT

Gene: Bcav_1043: Copper-translocating P-type ATPase (EC 3.6.3.4)
*
Brachybacterium faecium DSM 4810

Site:
position = -61
score = 6.52469
sequence = ATACCCCCTAGGGGTAT

Gene: Bfae_31400: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Copper-translocating P-type ATPase (EC 3.6.3.4)
 
CRON 2.
copP
*2
Arthrobacter aurescens TC1

Site:
position = -144
score = 6.3677
sequence = ATACCCCCATGGGGTAT

Gene: AAur_pTC10138: Heavy metal transport/detoxification protein

Site:
position = -68
score = 6.25671
sequence = ATACCCACTGGGGGTAT

Site:
position = -35
score = 6.16027
sequence = GTACCCCCTAGGGGTAT

Gene: AAur_pTC10131: Heavy metal transport/detoxification protein
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3872: Heavy metal transport/detoxification protein
 
Arthrobacter sp. FB24

Gene: Arth_4098: Heavy metal transport/detoxification protein
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_4022: Heavy metal transport/detoxification protein
*
Brachybacterium faecium DSM 4810

Site:
position = -72
score = 6.38028
sequence = ATACCCCTCGGGGGTAT

Site:
position = -40
score = 5.97098
sequence = ATACCCCTCGAGGGTAT

Gene: Bfae_19780: Heavy metal transport/detoxification protein
 
Brevibacterium linens BL2

Gene: BlinB01000849: Heavy metal transport/detoxification protein
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1036: Heavy metal transport/detoxification protein
 
Janibacter sp. HTCC2649

Gene: JNB_12024: Heavy metal transport/detoxification protein
 
Jonesia denitrificans DSM 20603

Gene: Jden_2500: Heavy metal transport/detoxification protein
 
Kocuria rhizophila DC2201

Gene: KRH_01190: Heavy metal transport/detoxification protein
*2
Kytococcus sedentarius DSM 20547

Site:
position = -72
score = 6.5216
sequence = ATACCCCCGGGGGGTAT

Gene: Ksed_04940: Heavy metal transport/detoxification protein

Site:
position = -94
score = 5.90848
sequence = ATACCCTGAGGGGGTAT

Gene: Ksed_10610: Heavy metal transport/detoxification protein
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_0581: Heavy metal transport/detoxification protein
 
Tropheryma whipplei str. Twist
Heavy metal transport/detoxification protein
Bfae_19790
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_19790: Hypothetical protein
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Hypothetical protein
copA
 4
Arthrobacter aurescens TC1

Gene: AAur_pTC20165: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: AAur_pTC10132: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: AAur_4095: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: AAur_pTC10139: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3873: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Arthrobacter sp. FB24

Gene: Arth_4099: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_4018: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Brachybacterium faecium DSM 4810

Gene: Bfae_19800: Copper-translocating P-type ATPase (EC 3.6.3.4)
 2
Brevibacterium linens BL2

Gene: BlinB01000848: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: BlinB01000343: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1037: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Janibacter sp. HTCC2649

Gene: JNB_12034: Copper-translocating P-type ATPase (EC 3.6.3.4)
 2
Jonesia denitrificans DSM 20603

Gene: Jden_2501: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: Jden_0919: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Kocuria rhizophila DC2201

Gene: KRH_01180: Copper-translocating P-type ATPase (EC 3.6.3.4)
 2
Kytococcus sedentarius DSM 20547

Gene: Ksed_04950: Copper-translocating P-type ATPase (EC 3.6.3.4)

Gene: Ksed_10590: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_0580: Copper-translocating P-type ATPase (EC 3.6.3.4)
 
Tropheryma whipplei str. Twist
Copper-translocating P-type ATPase (EC 3.6.3.4)
csoR
*
Arthrobacter aurescens TC1

Site:
position = -53
score = 6.30159
sequence = ATACCCCCAGGGGGTAC

Site:
position = -28
score = 6.11539
sequence = ATACCCCCTATGGGTAT

Gene: AAur_4093: Copper resistance transcriptional regulator CsoR, CsoR family
*
Arthrobacter chlorophenolicus A6

Site:
position = -53
score = 6.30159
sequence = ATACCCCCTGGGGGTAC

Site:
position = -28
score = 5.96954
sequence = ATACCCCGACGGGGTAT

Gene: Achl_3871: Copper resistance transcriptional regulator CsoR, CsoR family
*
Arthrobacter sp. FB24

Site:
position = -28
score = 6.38337
sequence = ATACCCCTTAGGGGTAT

Gene: Arth_4097: Copper resistance transcriptional regulator CsoR, CsoR family
*
Beutenbergia cavernae DSM 12333

Site:
position = -147
score = 5.95336
sequence = ATACCCCCTCGGGGTAC

Site:
position = -113
score = 6.38028
sequence = ATACCCCTCGGGGGTAT

Site:
position = -44
score = 6.08197
sequence = ATACCCCTGTGGGGTAT

Gene: Bcav_4021: Copper resistance transcriptional regulator CsoR, CsoR family
 
Brachybacterium faecium DSM 4810

Gene: Bfae_19810: Copper resistance transcriptional regulator CsoR, CsoR family
*
Brevibacterium linens BL2

Site:
position = -28
score = 5.9584
sequence = ATACCCTAAGGGGGTAT

Gene: BlinB01000850: Copper resistance transcriptional regulator CsoR, CsoR family
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
*
Janibacter sp. HTCC2649

Site:
position = -28
score = 5.81399
sequence = ATACCCAAGGGGGGTAT

Gene: JNB_12019: Copper resistance transcriptional regulator CsoR, CsoR family
 2
Jonesia denitrificans DSM 20603

Gene: Jden_0918: Copper resistance transcriptional regulator CsoR, CsoR family

Gene: Jden_2499: Copper resistance transcriptional regulator CsoR, CsoR family
*
Kocuria rhizophila DC2201

Site:
position = -20
score = 6.52469
sequence = ATACCCCCAAGGGGTAT

Gene: KRH_01200: Copper resistance transcriptional regulator CsoR, CsoR family
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_10580: Copper resistance transcriptional regulator CsoR, CsoR family
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_0582: Copper resistance transcriptional regulator CsoR, CsoR family
 
Tropheryma whipplei str. Twist
Copper resistance transcriptional regulator CsoR, CsoR family
JNB_12029
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_12029: Putative secreted protein
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Putative secreted protein
Ksed_10600
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_10600: Hypothetical protein
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Hypothetical protein
Bcav_4019
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
*
Beutenbergia cavernae DSM 12333

Site:
position = -247
score = 5.95336
sequence = GTACCCCGAGGGGGTAT

Gene: Bcav_4019: Hypothetical protein
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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