Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TauR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Taurine utilization
Effector: Taurine
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1 6 3
Delftia acidovorans SPH-1 10 3
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 5 2
Verminephrobacter eiseniae EF01-2 11 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
odpA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -112
score = 6.29975
sequence = CTGGCTCCTA-(13)-GTGGCCCCCG

Gene: Daci_5671: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -156
score = 6.60705
sequence = CTGGCCCTGC-(13)-TTGGCTCTTC

Gene: Veis_4290: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
oppB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5670: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4291: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
oppC
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5669: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4292: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
oppD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5668: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4293: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
oppF
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5667: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4294: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
COG1574
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5666: Amidohydrolase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4295: Amidohydrolase
Amidohydrolase
COG0523
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5665: Cobalamin synthesis protein/P47K
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4296: Cobalamin synthesis protein/P47K
Cobalamin synthesis protein/P47K
 
CRON 2.
tauA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -213
score = 9.03134
sequence = CTGGACCTAA-(13)-CTGGCCCTAC

Gene: CtesDRAFT_2755: Taurine ABC transporter, taurine-binding periplasmic protein TauA
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -90
score = 6.8353
sequence = CTGGCTCCAT-(13)-CTGGTACTTC

Gene: Vapar_3846: Taurine ABC transporter, taurine-binding periplasmic protein TauA
*
Verminephrobacter eiseniae EF01-2

Site:
position = -162
score = 6.53156
sequence = CTGGCTCCAT-(13)-CTGGTACTTT

Gene: Veis_4286: Taurine ABC transporter, taurine-binding periplasmic protein TauA
Taurine ABC transporter, taurine-binding periplasmic protein TauA
tauB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0046: Taurine ABC transporter, ATP-binding protein TauB
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2756: Taurine ABC transporter, ATP-binding protein TauB
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3845: Taurine ABC transporter, ATP-binding protein TauB
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4285: Taurine ABC transporter, ATP-binding protein TauB
Taurine ABC transporter, ATP-binding protein TauB
tauC
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0047: Taurine ABC transporter, permease protein TauC
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2757: Taurine ABC transporter, permease protein TauC
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3844: Taurine ABC transporter, permease protein TauC
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4284: Taurine ABC transporter, permease protein TauC
Taurine ABC transporter, permease protein TauC
 
CRON 3.
tauX
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -149
score = 6.6204
sequence = TTGGACTTAA-(13)-CTGGTTCTAC

Gene: CtesDRAFT_2753: Putative small subunit of taurine dehydrogenase
*
Delftia acidovorans SPH-1

Site:
position = -144
score = 8.16031
sequence = CTGGACCTAA-(13)-CTGGTTCTAA

Gene: Daci_2020: Putative small subunit of taurine dehydrogenase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -85
score = 7.05358
sequence = CTGGCTCGGT-(13)-CTGGCCCTAT

Gene: Vapar_3849: Putative small subunit of taurine dehydrogenase
 
Verminephrobacter eiseniae EF01-2
Putative small subunit of taurine dehydrogenase
tauY
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -174
score = 7.60985
sequence = CTGGCTCCAT-(13)-GTGGCCCTAA

Gene: CtesDRAFT_2754: Taurine dehydrogenase, large subunit
*
Delftia acidovorans SPH-1

Site:
position = -172
score = 7.38041
sequence = CTGGCTCTAT-(13)-GTGGCGCTAA

Gene: Daci_2019: Taurine dehydrogenase, large subunit
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3850: Taurine dehydrogenase, large subunit
*
Verminephrobacter eiseniae EF01-2

Site:
position = -239
score = 4.97829
sequence = GTGCGCCAGG-(13)-CTGGCACGCC

Gene: Veis_4289: Taurine dehydrogenase, large subunit
Taurine dehydrogenase, large subunit
gabP
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2752: Gamma-aminobutyrate permease
 
Delftia acidovorans SPH-1

Gene: Daci_2021: Gamma-aminobutyrate permease
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Gamma-aminobutyrate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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