Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Staphylococcaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor (activator)
Biological process: Gamma-aminobutyrate utilization
Effector: Pyridoxal-5-phosphate; Gamma-aminobutyric acid
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Macrococcus caseolyticus JCSC5402
Staphylococcus aureus subsp. aureus N315
Staphylococcus capitis SK14
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus epidermidis ATCC 12228
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
 
Macrococcus caseolyticus JCSC5402
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14
 
Staphylococcus carnosus subsp. carnosus TM300
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -98
score = 11.7113
sequence = TACCAT-(13)-CTGGTA-(10)-GACCAA

Gene: SSP0187: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD
 
Macrococcus caseolyticus JCSC5402
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_2374: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435

Gene: SH0214: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0188: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
gabP
 
Macrococcus caseolyticus JCSC5402
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14
 
Staphylococcus carnosus subsp. carnosus TM300
 
Staphylococcus epidermidis ATCC 12228
 
Staphylococcus haemolyticus JCSC1435
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0189: Gamma-aminobutyrate permease
Gamma-aminobutyrate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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