Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor (activator)
Biological process: Gamma-aminobutyrate utilization
Effector: Pyridoxal-5-phosphate; Gamma-aminobutyric acid
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 3 1
Bacillus pumilus SAFR-032 3 1
Bacillus subtilis subsp. subtilis str. 168 2 1
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1242: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -182
score = 12.5278
sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA

Gene: RBAM_004150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Bacillus cereus ATCC 14579

Gene: BC0355: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125

Gene: BH0991: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bacillus licheniformis DSM 13

Site:
position = -87
score = 12.5278
sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA

Gene: BLi00474: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bacillus pumilus SAFR-032

Site:
position = -86
score = 12.5278
sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA

Gene: BPUM_0362: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -86
score = 12.5278
sequence = TACCAT-(13)-TTGGTA-(10)-TACCAA

Gene: BSU03900: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabP
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1244: Gamma-aminobutyrate permease
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125

Gene: BH0994: Gamma-aminobutyrate permease
 
Bacillus licheniformis DSM 13

Gene: BLi00475: Gamma-aminobutyrate permease
 
Bacillus pumilus SAFR-032

Gene: BPUM_0363: Gamma-aminobutyrate permease
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB0489: Gamma-aminobutyrate permease
 
Paenibacillus sp. JDR-2
Gamma-aminobutyrate permease
gabD
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_004160: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125

Gene: BH3316: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bacillus licheniformis DSM 13

Gene: BLi00476: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0364: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03910: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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