Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367 4 2
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K 4 2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxK2
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -83
score = 9.41603
sequence = AATTGGCTG-(10)-AAGCCAATT

Gene: LVIS_2152: Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -87
score = 9.41603
sequence = AATTGGCTG-(10)-AAGCCAATT

Gene: LSA1352: Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family
pdxU2
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2151: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1580: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0937: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2806: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0063: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1353: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1672: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0916: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
COG4475
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2150: Uncharacterized protein conserved in bacteria
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0756: Uncharacterized protein conserved in bacteria
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0260: Uncharacterized protein conserved in bacteria
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1499: Uncharacterized protein conserved in bacteria
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1354: Uncharacterized protein conserved in bacteria
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1333: Uncharacterized protein conserved in bacteria
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Uncharacterized protein conserved in bacteria
 
CRON 2.
pdxR
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -66
score = 9.41603
sequence = AATTGGCTT-(10)-CAGCCAATT

Gene: LVIS_2153: Putative transcritional regulator of pyridoxine metabolism, GntR family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -53
score = 9.41603
sequence = AATTGGCTT-(10)-CAGCCAATT

Gene: LSA1351: Putative transcritional regulator of pyridoxine metabolism, GntR family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Putative transcritional regulator of pyridoxine metabolism, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD