Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 3 2
Listeria monocytogenes EGD-e 3 2
Listeria seeligeri serovar 1/2b str. SLCC3954 3 2
Listeria welshimeri serovar 6b str. SLCC5334 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxR
*
Listeria innocua Clip11262

Site:
position = -46
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lin2204: Predicted transcriptional regulator of pyridoxine metabolism, GntR family
*
Listeria monocytogenes EGD-e

Site:
position = -48
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lmo2100: Predicted transcriptional regulator of pyridoxine metabolism, GntR family
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -48
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lse_2090: Predicted transcriptional regulator of pyridoxine metabolism, GntR family
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -47
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lwe2121: Predicted transcriptional regulator of pyridoxine metabolism, GntR family
Predicted transcriptional regulator of pyridoxine metabolism, GntR family
 
CRON 2.
pdxS
*
Listeria innocua Clip11262

Site:
position = -105
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lin2205: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Listeria monocytogenes EGD-e

Site:
position = -105
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lmo2101: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -104
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lse_2091: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -105
score = 10.3923
sequence = AATTGGATG-(10)-CATCCAATT

Gene: lwe2122: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Listeria innocua Clip11262

Gene: lin2206: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Listeria monocytogenes EGD-e

Gene: lmo2102: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2092: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2123: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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