Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Mycobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium abscessus ATCC 19977 1 1
Mycobacterium avium 104
Mycobacterium marinum M
Mycobacterium leprae TN
Mycobacterium smegmatis str. MC2 155
Mycobacterium tuberculosis H37Rv
Mycobacterium flavescens PYR-GCK
Mycobacterium vanbaalenii PYR-1
Mycobacterium sp. JLS
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Mycobacterium abscessus ATCC 19977

Site:
position = -68
score = 12.5959
sequence = ACTGGACTGG-(14)-TGTGGTCTGT-(25)-ATGTGTCACA

Gene: MAB_1356: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_4975: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_4367: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Mycobacterium sp. JLS

Gene: Mjls_5579: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD