Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: activator
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975 2 1
Corynebacterium diphtheriae NCTC 13129 2 1
Corynebacterium efficiens YS-314
Corynebacterium glutamicum ATCC 13032 2 1
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxS
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2117: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -71
score = 13.888
sequence = TAAGTGGTCT-(14)-AAAATGGCTC-(7)-GGACCAATTT

Gene: cauri_0520: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -71
score = 14.2749
sequence = AAAGTGGTCT-(14)-AATTTGGATC-(7)-AGTCCACTTT

Gene: DIP0227: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Corynebacterium efficiens YS-314
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -71
score = 14.3774
sequence = AAAGTGGTCT-(14)-AAAGTGGATC-(7)-AGTCCACTTT

Gene: cg0898: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Corynebacterium jeikeium K411

Gene: jk1060: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1034: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Corynebacterium urealyticum DSM 7109
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2119: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0521: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0228: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0899: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium jeikeium K411

Gene: jk1058: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1033: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Corynebacterium urealyticum DSM 7109
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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