Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: activator
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338
Nakamurella multipartita DSM 44233
Frankia sp. EAN1pec
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Nocardioides sp. JS614
Propionibacterium acnes KPA171202 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxS
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec

Gene: Franean1_5149: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Acidothermus cellulolyticus 11B

Gene: Acel_1348: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Frankia sp. CcI3

Gene: Francci3_1366: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Nocardioides sp. JS614

Gene: Noca_2381: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Propionibacterium acnes KPA171202

Site:
position = -61
score = 13.6467
sequence = AAAGTGGTCT-(14)-TATATGGATC-(7)-GAACCACAAT

Gene: PPA0965: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Actinosynnema mirum DSM 43827

Gene: Amir_2109: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_2017: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 2
Nakamurella multipartita DSM 44233

Gene: Namu_2036: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Gene: Namu_3399: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Frankia sp. EAN1pec

Gene: Franean1_5148: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Acidothermus cellulolyticus 11B

Gene: Acel_1347: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Frankia sp. CcI3

Gene: Francci3_1367: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Nocardioides sp. JS614

Gene: Noca_2382: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Propionibacterium acnes KPA171202

Gene: PPA0966: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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