Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: activator
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2 2 1
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603 2 1
Kocuria rhizophila DC2201 2 1
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxS
 2
Arthrobacter aurescens TC1

Gene: AAur_2306: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: AAur_0487: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 2
Arthrobacter chlorophenolicus A6

Gene: Achl_2040: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: Achl_2776: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 2
Arthrobacter sp. FB24

Gene: Arth_2314: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: Arth_1760: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1986: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Brachybacterium faecium DSM 4810

Gene: Bfae_00350: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Brevibacterium linens BL2

Site:
position = -135
score = 8.14026
sequence = ATACTGGCCT-(14)-TTTCTGGCAC-(7)-GGGCCACCGG

Gene: BlinB01003388: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1819: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Janibacter sp. HTCC2649

Gene: JNB_02405: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Jonesia denitrificans DSM 20603

Site:
position = -107
score = 13.093
sequence = GAACTGGTCT-(14)-TAACTGGATC-(7)-GGACCAGCCT

Gene: Jden_1600: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Kocuria rhizophila DC2201

Site:
position = -71
score = 8.66261
sequence = CATCTGGACC-(14)-ATTATGGCCC-(7)-GGACCACTTC

Gene: KRH_01130: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_15370: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx10720: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Tropheryma whipplei str. Twist

Gene: TW264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Arthrobacter aurescens TC1

Gene: AAur_2301: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 2
Arthrobacter chlorophenolicus A6

Gene: Achl_2035: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Gene: Achl_3253: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Arthrobacter sp. FB24

Gene: Arth_2305: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1988: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01003389: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 2
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1818: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Gene: CMM_1119: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Janibacter sp. HTCC2649

Gene: JNB_02435: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Jonesia denitrificans DSM 20603

Gene: Jden_1601: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Kocuria rhizophila DC2201

Gene: KRH_01120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_15360: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx10740: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2003: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Tropheryma whipplei str. Twist

Gene: TW265: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD