Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MdcY - Various betaproteobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Azoarcus sp. EbN1
Dechloromonas aromatica RCB 12 2
Thauera sp. MZ1T
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
matP
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
*
Dechloromonas aromatica RCB

Site:
position = -104
score = 4.09541
sequence = ATGAATACAA

Site:
position = -125
score = 4.98788
sequence = TTGTATACAC

Gene: Daro_4023: TRAP malonate transporter, periplasmic subunit
 
Thauera sp. MZ1T
TRAP malonate transporter, periplasmic subunit
matQ
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4022: TRAP malonate transporter, small permease subunit
 
Thauera sp. MZ1T
TRAP malonate transporter, small permease subunit
matM
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4021: TRAP malonate transporter, large permease subunit
 
Thauera sp. MZ1T
TRAP malonate transporter, large permease subunit
mdcA
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4020: Malonate decarboxylase alpha subunit
 
Thauera sp. MZ1T
Malonate decarboxylase alpha subunit
mdcC
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4019: Malonate decarboxylase delta subunit
 
Thauera sp. MZ1T
Malonate decarboxylase delta subunit
mdcD
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4018: Malonate decarboxylase beta subunit
 
Thauera sp. MZ1T
Malonate decarboxylase beta subunit
mdcE
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4017: Malonate decarboxylase gamma subunit
 
Thauera sp. MZ1T
Malonate decarboxylase gamma subunit
mdcG
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4016: Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
 
Thauera sp. MZ1T
Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
mdcB
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4015: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
 
Thauera sp. MZ1T
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcH
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4014: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
 
Thauera sp. MZ1T
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
Daro_4013
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB

Gene: Daro_4013: Protein of unknown function DUF81, putative permease
 
Thauera sp. MZ1T
Protein of unknown function DUF81, putative permease
 
CRON 2.
mdcY
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Azoarcus sp. EbN1
*
Dechloromonas aromatica RCB

Site:
position = -49
score = 4.98788
sequence = GTGTATACAA

Site:
position = -70
score = 4.09541
sequence = TTGTATTCAT

Gene: Daro_4024: Transcriptional regulator of malonate metabolism, GntR family
 
Thauera sp. MZ1T
Transcriptional regulator of malonate metabolism, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD