Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MdcY - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571 6 2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 11 3
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 4 2
Rhizobium leguminosarum bv. viciae 3841 4 2
Rhizobium sp. NGR234 4 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 5 2
Xanthobacter autotrophicus Py2 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
mdcY
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Azorhizobium caulinodans ORS 571

Site:
position = -42
score = 4.32855
sequence = ATGTATGCAA

Gene: AZC_3296: Transcriptional regulator of malonate metabolism, GntR family
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -43
score = 4.79785
sequence = GTGTATACAC

Gene: RHE_CH00919: Transcriptional regulator of malonate metabolism, GntR family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -25
score = 4.98788
sequence = GTGTATACAA

Gene: RL0989: Transcriptional regulator of malonate metabolism, GntR family
*
Rhizobium sp. NGR234

Site:
position = -43
score = 4.98788
sequence = GTGTATACAA

Gene: NGR_b02870: Transcriptional regulator of malonate metabolism, GntR family
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -50
score = 5.17791
sequence = TTGTATACAA

Gene: SMa0160: Transcriptional regulator of malonate metabolism, GntR family
*
Xanthobacter autotrophicus Py2

Site:
position = -70
score = 4.61426
sequence = TTGTATGCAA

Gene: Xaut_0520: Transcriptional regulator of malonate metabolism, GntR family
Transcriptional regulator of malonate metabolism, GntR family
 
CRON 2.
matA
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -125
score = 4.79785
sequence = GTGTATACAC

Gene: RHE_CH00920: Malonyl-CoA decarboxylase (EC 4.1.1.9)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -144
score = 4.98788
sequence = TTGTATACAC

Gene: RL0990: Malonyl-CoA decarboxylase (EC 4.1.1.9)
*
Rhizobium sp. NGR234

Site:
position = -136
score = 4.98788
sequence = TTGTATACAC

Gene: NGR_b02860: Malonyl-CoA decarboxylase (EC 4.1.1.9)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonyl-CoA decarboxylase (EC 4.1.1.9)
matB
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr0509: Malonyl-CoA synthase
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0226: Malonyl-CoA synthase
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_1586: Malonyl-CoA synthase
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2797: Malonyl-CoA synthase
 
Rhizobium etli CFN 42

Gene: RHE_CH00921: Malonyl-CoA synthase
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL0991: Malonyl-CoA synthase
 
Rhizobium sp. NGR234

Gene: NGR_b02850: Malonyl-CoA synthase
 
Rhodopseudomonas palustris CGA009

Gene: RPA0221: Malonyl-CoA synthase
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonyl-CoA synthase
matC
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH00922: malonate transporter
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL0992: malonate transporter
 
Rhizobium sp. NGR234

Gene: NGR_b02840: malonate transporter
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
malonate transporter
 
CRON 3.
matA
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Azorhizobium caulinodans ORS 571

Site:
position = -174
score = 4.32855
sequence = TTGCATACAT

Gene: AZC_3297: Malonyl-CoA decarboxylase (EC 4.1.1.9)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr6729: Malonyl-CoA decarboxylase (EC 4.1.1.9)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_6289: Malonyl-CoA decarboxylase (EC 4.1.1.9)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0150: Malonyl-CoA decarboxylase (EC 4.1.1.9)
*
Xanthobacter autotrophicus Py2

Site:
position = -235
score = 4.61426
sequence = TTGCATACAA

Gene: Xaut_0519: Malonyl-CoA decarboxylase (EC 4.1.1.9)
Malonyl-CoA decarboxylase (EC 4.1.1.9)
matB
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3298: Malonyl-CoA synthase
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0518: Malonyl-CoA synthase
Malonyl-CoA synthase
matP
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3299: TRAP malonate transporter, periplasmic subunit
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll4430: TRAP malonate transporter, periplasmic subunit
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4052: TRAP malonate transporter, periplasmic subunit
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2543: TRAP malonate transporter, periplasmic subunit
*
Sinorhizobium meliloti 1021

Site:
position = -88
score = 5.17791
sequence = TTGTATACAA

Gene: SMa0157: TRAP malonate transporter, periplasmic subunit
 
Xanthobacter autotrophicus Py2
TRAP malonate transporter, periplasmic subunit
matQ
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3300: TRAP malonate transporter, small permease subunit
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll4429: TRAP malonate transporter, small permease subunit
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4051: TRAP malonate transporter, small permease subunit
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2542: TRAP malonate transporter, small permease subunit
 
Sinorhizobium meliloti 1021

Gene: SMa0155: TRAP malonate transporter, small permease subunit
 
Xanthobacter autotrophicus Py2
TRAP malonate transporter, small permease subunit
matM
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3301: TRAP malonate transporter, large permease subunit
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll4428: TRAP malonate transporter, large permease subunit
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4050: TRAP malonate transporter, large permease subunit
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2541: TRAP malonate transporter, large permease subunit
 
Sinorhizobium meliloti 1021

Gene: SMa0151: TRAP malonate transporter, large permease subunit
 
Xanthobacter autotrophicus Py2
TRAP malonate transporter, large permease subunit
 
CRON 4.
mdcA
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -82
score = 3.99144
sequence = GCGTATACAC

Site:
position = -42
score = 3.57471
sequence = TTAGATACAA

Gene: bll1276: Malonate decarboxylase alpha subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate decarboxylase alpha subunit
 
CRON 5.
mdcL
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -121
score = 3.99144
sequence = GTGTATACGC

Site:
position = -161
score = 3.57471
sequence = TTGTATCTAA

Gene: blr1277: Malonate transporter, MadL subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate transporter, MadL subunit
mdcM
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr1278: Malonate transporter, MadM subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate transporter, MadM subunit
mdcY
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr1279: Transcriptional regulator of malonate metabolism, GntR family
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Transcriptional regulator of malonate metabolism, GntR family
 
CRON 6.
mdcC
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -46
score = 3.61782
sequence = TTGTACGCAC

Gene: bll0269: Malonate decarboxylase delta subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate decarboxylase delta subunit
mdcD
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 2
Bradyrhizobium japonicum USDA 110

Gene: bll1275: Malonate decarboxylase beta subunit

Gene: bll0268: Malonate decarboxylase beta subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate decarboxylase beta subunit
mdcE
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 2
Bradyrhizobium japonicum USDA 110

Gene: bll1274: Malonate decarboxylase gamma subunit

Gene: bll0267: Malonate decarboxylase gamma subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonate decarboxylase gamma subunit
mdcG
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll0266: Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
mdcB
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 2
Bradyrhizobium japonicum USDA 110

Gene: bll1272: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)

Gene: bll0265: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcF
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll0264: malonate transporter
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
malonate transporter
mdcH
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 2
Bradyrhizobium japonicum USDA 110

Gene: bll0263: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)

Gene: bll1271: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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