Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MlnR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Stenotrophomonas maltophilia K279a 9 1
Xanthomonas axonopodis pv. citri str. 306 6 1
Xanthomonas campestris pv. campestris str. ATCC 33913 2 1
Xylella fastidiosa 9a5c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
mdcA
*
Stenotrophomonas maltophilia K279a

Site:
position = -44
score = 6.49288
sequence = GTAATTATGTCGTAATTAC

Gene: Smlt1232: Malonate decarboxylase alpha subunit
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -55
score = 6.66756
sequence = ATAATTACGATGTAATTAC

Site:
position = -44
score = 5.12255
sequence = GTAATTACTTTGACATTAC

Gene: XAC0560: Malonate decarboxylase alpha subunit
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -56
score = 6.66756
sequence = ATAATTACGATGTAATTAC

Site:
position = -45
score = 5.2085
sequence = GTAATTACTTCGACATTAC

Gene: XCC3609: Malonate decarboxylase alpha subunit
 
Xylella fastidiosa 9a5c
Malonate decarboxylase alpha subunit
mdcC
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1231: Malonate decarboxylase delta subunit
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0561: Malonate decarboxylase delta subunit
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3610: Malonate decarboxylase delta subunit
 
Xylella fastidiosa 9a5c
Malonate decarboxylase delta subunit
mdcD
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1230: Malonate decarboxylase beta subunit
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0562: Malonate decarboxylase beta subunit
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3611: Malonate decarboxylase beta subunit
 
Xylella fastidiosa 9a5c
Malonate decarboxylase beta subunit
mdcE
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1229: malonate decarboxylase subunit, involved in the stability of the enzyme complex
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0563: malonate decarboxylase subunit, involved in the stability of the enzyme complex
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3612: malonate decarboxylase subunit, involved in the stability of the enzyme complex
 
Xylella fastidiosa 9a5c
malonate decarboxylase subunit, involved in the stability of the enzyme complex
mdcG
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1228: malonate decarboxylase subunit, Holo-ACP synthase
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0564: malonate decarboxylase subunit, Holo-ACP synthase
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3613: malonate decarboxylase subunit, Holo-ACP synthase
 
Xylella fastidiosa 9a5c
malonate decarboxylase subunit, Holo-ACP synthase
mdcB
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1227: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0565: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3614: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
 
Xylella fastidiosa 9a5c
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcH
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1226: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0566: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3615: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
 
Xylella fastidiosa 9a5c
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
matC
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1225: malonate transporter
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0567: malonate transporter
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3616: malonate transporter
 
Xylella fastidiosa 9a5c
malonate transporter
mlnR
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1224: Transcriptional regulator of malonate metabolism, GntR family
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0568: Transcriptional regulator of malonate metabolism, GntR family
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3617: Transcriptional regulator of malonate metabolism, GntR family
 
Xylella fastidiosa 9a5c
Transcriptional regulator of malonate metabolism, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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