Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Csal_1739 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cellvibrio japonicus Ueda107
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Hahella chejuensis KCTC 2396
Chromohalobacter salexigens DSM 3043 9 3
Alcanivorax borkumensis SK2
Marinobacter aqueolei
Marinobacter sp. ELB17
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
CJA_1138
 
Cellvibrio japonicus Ueda107

Gene: CJA_1138: 2-keto-3-deoxy-L-fuconate dehydrogenase
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0865: 2-keto-3-deoxy-L-fuconate dehydrogenase
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -85
score = 4.42497
sequence = GATGGCTCGACCATT

Site:
position = -73
score = 4.4258
sequence = ATTGGTCAGGCCTCT

Gene: Csal_1738: 2-keto-3-deoxy-L-fuconate dehydrogenase
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
2-keto-3-deoxy-L-fuconate dehydrogenase
mhpD
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1737: 2,4-diketo-3-deoxy-L-fuconate hydrolase
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
2,4-diketo-3-deoxy-L-fuconate hydrolase
 
CRON 2.
Csal_1739
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -103
score = 4.4258
sequence = AGAGGCCTGACCAAT

Site:
position = -91
score = 4.42497
sequence = AATGGTCGAGCCATC

Gene: Csal_1739: Transcriptional regulator, GntR family
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
Transcriptional regulator, GntR family
 
CRON 3.
tdh
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -79
score = 4.4258
sequence = ATTGGCCTGACCTCT

Gene: Csal_1736: Alcohol dehydrogenase GroES-like protein
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
Alcohol dehydrogenase GroES-like protein
uxaA
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1735: Altronate hydrolase (EC 4.2.1.7)
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
Altronate hydrolase (EC 4.2.1.7)
mtlD
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1734: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
D-mannonate oxidoreductase (EC 1.1.1.57)
Csal_1733
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1733: TRAP transporter solute receptor, unknown substrate 8
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
TRAP transporter solute receptor, unknown substrate 8
Csal_1732
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1732: TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 8
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 8
Csal_1731
 
Cellvibrio japonicus Ueda107
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1731: TRAP dicarboxylate transporter, DctM subunit, unknown substrate 8
 
Alcanivorax borkumensis SK2
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 8
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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