Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR3 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666 9 2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 9 1
Verminephrobacter eiseniae EF01-2 8 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuR3
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -240
score = 5.09543
sequence = ATAGTGGTAAACCACTAA

Site:
position = -217
score = 5.89064
sequence = AAATTGGTATACCACTTA

Site:
position = -61
score = 5.07318
sequence = TAATTGGTAAACCATCTT

Gene: Bpro_3977: Predicted transcriptional regulator for glucuronate utilization, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -46
score = 4.766
sequence = TAATTGGTATGCCACGCA

Site:
position = -69
score = 5.0475
sequence = CTAGTGGTAAACCACTAT

Gene: Vapar_2876: Predicted transcriptional regulator for glucuronate utilization, GntR family
*
Verminephrobacter eiseniae EF01-2

Site:
position = -66
score = 5.0475
sequence = CTAGTGGTAAACCACTAT

Gene: Veis_3567: Predicted transcriptional regulator for glucuronate utilization, GntR family
Predicted transcriptional regulator for glucuronate utilization, GntR family
Aave_2470
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2877: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
 
Verminephrobacter eiseniae EF01-2
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
COG0834
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -118
score = 5.09543
sequence = TTAGTGGTTTACCACTAT

Site:
position = -297
score = 5.07318
sequence = AAGATGGTTTACCAATTA

Site:
position = -141
score = 5.89064
sequence = TAAGTGGTATACCAATTT

Gene: Bpro_3976: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2878: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3566: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
COG1063
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2879: Zn-dependent dehydrogenase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3565: Zn-dependent dehydrogenase
Zn-dependent dehydrogenase
COG0765
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3975: ABC-type amino acid transport system, permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2880: ABC-type amino acid transport system, permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3564: ABC-type amino acid transport system, permease component
ABC-type amino acid transport system, permease component
COG0765-2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3974: ABC-type amino acid transport system, permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2881: ABC-type amino acid transport system, permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3563: ABC-type amino acid transport system, permease component
ABC-type amino acid transport system, permease component
COG1126
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3973: ABC-type polar amino acid transport system, ATPase component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2882: ABC-type polar amino acid transport system, ATPase component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3562: ABC-type polar amino acid transport system, ATPase component
ABC-type polar amino acid transport system, ATPase component
Bpro_3978
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3978: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2883: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3561: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
uxuA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3970: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2884: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3560: D-mannonate oxidoreductase (EC 1.1.1.57)
D-mannonate oxidoreductase (EC 1.1.1.57)
COG2055
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3972: Malate dehydrogenase (EC 1.1.1.37)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Malate dehydrogenase (EC 1.1.1.37)
COG2706
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3971: 3-carboxymuconate cyclase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
3-carboxymuconate cyclase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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