Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR3 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia cepacia AMMD
Burkholderia phymatum STM815
Burkholderia pseudomallei K96243
Burkholderia sp. 383 3 2
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuA
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia cepacia AMMD
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -226
score = 5.12018
sequence = AAAATGGTACACCAATTC

Site:
position = -128
score = 5.2657
sequence = CAACTGGTAAACCACTAT

Site:
position = -104
score = 5.40303
sequence = CAACTGGCATACCAATCA

Gene: Bcep18194_B1358: Mannonate dehydratase (EC 4.2.1.8)
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Mannonate dehydratase (EC 4.2.1.8)
Sugar phosphate permease
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia cepacia AMMD
 
Burkholderia phymatum STM815

Gene: Bphy_5154: Probable sugar transporter
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B1357: Probable sugar transporter
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Probable sugar transporter
 
CRON 2.
uxuR3
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia cepacia AMMD
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -165
score = 5.2657
sequence = ATAGTGGTTTACCAGTTG

Site:
position = -67
score = 5.12018
sequence = GAATTGGTGTACCATTTT

Site:
position = -189
score = 5.40303
sequence = TGATTGGTATGCCAGTTG

Gene: Bcep18194_B1359: Predicted transcriptional regulator for glucuronate utilization, GntR family
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Predicted transcriptional regulator for glucuronate utilization, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD