Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR2 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 2 1
Bordetella bronchiseptica RB50 8 1
Bordetella petrii DSM 12804 20 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuR2-2
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -40
score = 5.11106
sequence = AAAGTGGTAAGGCCACTTT

Gene: Bpet3949: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
gutB/tdh
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3948: L-idonate 5-dehydrogenase
L-idonate 5-dehydrogenase
dctP
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3947: TRAP C4-dicarboxylate-transporter, periplasmic binding protein
TRAP C4-dicarboxylate-transporter, periplasmic binding protein
dctM
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3946: TRAP C4-dicarboxylate transporter, small permease component
TRAP C4-dicarboxylate transporter, small permease component
dctQ
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3945: TRAP C4-dicarboxylate transporter, large permease component
TRAP C4-dicarboxylate transporter, large permease component
fabG
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3944: oxidoreductase
oxidoreductase
mhpD
 
Bordetella avium 197N

Gene: BAV0555: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3943: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
uxaA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3942: Altronate/galactarate dehydratase
Altronate/galactarate dehydratase
COG4948
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3941: Mandelate racemase/muconate lactonizing enzyme
Mandelate racemase/muconate lactonizing enzyme
uxuA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3940: Altronate dehydrogenase
Altronate dehydrogenase
 
CRON 2.
dgkA
 
Bordetella avium 197N

Gene: BAV0577: Diacylglycerol kinase (EC 2.7.1.107)
 
Bordetella bronchiseptica RB50

Gene: BB0959: Diacylglycerol kinase (EC 2.7.1.107)
*
Bordetella petrii DSM 12804

Site:
position = -151
score = 5.11106
sequence = AAAGTGGCCTTACCACTTT

Gene: Bpet3950: Diacylglycerol kinase (EC 2.7.1.107)
Diacylglycerol kinase (EC 2.7.1.107)
 
CRON 3.
uxuR2
*
Bordetella avium 197N

Site:
position = -40
score = 4.59671
sequence = CCAGTGGCCTGACCACTGA

Gene: BAV1879: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
*
Bordetella bronchiseptica RB50

Site:
position = -49
score = 4.72419
sequence = TTAGTGGCCTGACCACTGG

Gene: BB2654: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
*
Bordetella petrii DSM 12804

Site:
position = -40
score = 4.72419
sequence = TCAGTGGCCTGACCACTAG

Gene: Bpet2346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2653: TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Bordetella petrii DSM 12804

Gene: Bpet2345: TRAP-type C4-dicarboxylate transport system, periplasmic component
TRAP-type C4-dicarboxylate transport system, periplasmic component
dctM
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2652: TRAP C4-dicarboxylate transport system, small permease component
 
Bordetella petrii DSM 12804

Gene: Bpet2344: TRAP C4-dicarboxylate transport system, small permease component
TRAP C4-dicarboxylate transport system, small permease component
dctQ
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2651: TRAP C4-dicarboxylate transport system, large permease component
 
Bordetella petrii DSM 12804

Gene: Bpet2343: TRAP C4-dicarboxylate transport system, large permease component
TRAP C4-dicarboxylate transport system, large permease component
citE
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2650: Citrate lyase beta chain (EC 4.1.3.6)
 
Bordetella petrii DSM 12804

Gene: Bpet2342: Citrate lyase beta chain (EC 4.1.3.6)
Citrate lyase beta chain (EC 4.1.3.6)
ilvG
 
Bordetella avium 197N

Gene: BAV1880: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit
 
Bordetella bronchiseptica RB50

Gene: BB2649: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit
 
Bordetella petrii DSM 12804

Gene: Bpet2341: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit
COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit
amaB
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2648: N-carbamoyl-L-amino acid amidohydrolase
 
Bordetella petrii DSM 12804

Gene: Bpet2340: N-carbamoyl-L-amino acid amidohydrolase
N-carbamoyl-L-amino acid amidohydrolase
aldH
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2647: Aldehyde dehydrogenase (EC 1.2.1.3)
 
Bordetella petrii DSM 12804

Gene: Bpet2339: Aldehyde dehydrogenase (EC 1.2.1.3)
Aldehyde dehydrogenase (EC 1.2.1.3)
 
CRON 4.
Bpet2347
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -138
score = 4.72419
sequence = CTAGTGGTCAGGCCACTGA

Gene: Bpet2347: probable short-chain dehydrogenase
probable short-chain dehydrogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD